FMO13819.5prime Sequence
570 bp (570 high quality bases) assembled on 2013-10-14
> FMO13819.5prime
TCAGTCGACATGTCAGTCGCTGACACCATTGAATACGTGACCCTGGGCAA
TCCTGTCAGCAAGATGGTAGCCTCGTCCGCATCCGCCCTGCTCCGCACGC
TTGGTCTGCGTCCCAAGAAGGTGCCGGTGCAGGAGACGAGTATGGCGGTG
CTCCCTGCCGCCCACAGCTACGCGCATTCACACGGATCACTCTATCGACT
GGCCGGCTGCCATTACCACTTCATTCGGCTGGCCGGGATCGTCGGCGCGT
CGGCCATCTTTATGGGCGCCTACTGCAAGTACGTCCTGAAGGACGTCAGC
GATCCCAAGGAGCAGGTGGACTCGCAGGCCTTTGCTGATGTGGCCAATCG
CATCCACTTTCTGCACTCCTTTGCCATGATGGCCATGCCTCTGGCCCACT
ATCCCGTATTCACTGGCACTTTGATGATTACGGGCATGATGCTTTTCAGC
GGCTGCATGTACTACCGCGCTTTGACTGGCGAGAAGCGTCTGCAACCGTA
CGCGACCGTCGGAGGATTCTGCCTGATGGCCGCGTGGCTGTCGCTGGTCC
TGGCAAGCTTTCTAGACCAT
FMO13819.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4686-RB | 933 | CG4686-RB | 76..618 | 10..552 | 2715 | 100 | Plus |
| CG4686-RA | 1195 | CG4686-RA | 338..880 | 10..552 | 2715 | 100 | Plus |
| CG4562-RC | 6512 | CG4562-RC | 5375..5515 | 552..412 | 705 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19864989..19865297 | 103..411 | 1545 | 100 | Plus |
| 3R | 32079331 | 3R | 19866414..19866554 | 412..552 | 705 | 100 | Plus |
| X | 23542271 | X | 9575326..9575704 | 552..174 | 665 | 78.4 | Minus |
| 3R | 32079331 | 3R | 19864833..19864926 | 10..103 | 470 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:51:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1b | 5171 | Rt1b RT1B 5150bp | 2769..2887 | 554..439 | 127 | 60.8 | Minus |
FMO13819.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:23:40 Download gff for
FMO13819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4686-RA | 329..880 | 2..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:49:37 Download gff for
FMO13819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4686-RA | 329..880 | 2..552 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:49:37 Download gff for
FMO13819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19864824..19864925 | 2..102 | 96 | -> | Plus |
| 3R | 19864989..19865297 | 103..411 | 100 | -> | Plus |
| 3R | 19866414..19866554 | 412..552 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:23:40 Download gff for
FMO13819.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15690546..15690647 | 2..102 | 96 | -> | Plus |
| arm_3R | 15690711..15691019 | 103..411 | 100 | -> | Plus |
| arm_3R | 15692136..15692276 | 412..552 | 100 | | Plus |
