FMO13820.5prime Sequence
970 bp (892 high quality bases) assembled on 2013-10-14
> FMO13820.5prime
TCAGTCGACATGACCCAGCCAAGGATATGCTTTTTAGTTGGAGCCCTAAT
CCTCTCCTGCACTTGCGTTTCGTGCTCCAAGGACAAATGCGCTGTCAACG
AACACAACCCAAACTCAAATACCAGCTACGACTTTGTGCCGCACATCCTG
CACGCCCTGGCGATCCATCGACCCTGCGTAATCGGTGATCCGAAATGCCT
CTGCCATGTGGCGACCATTCAAAGGGATTTGGAACCGTATGTGGACAAGG
GGATTACACCTGAGATGATGGCGCAATCCAAACGATTGGGCACTTTTTAC
CAGATAATCCGTGGACGCATCTATCGCCAGCAGAAGTGCCTGCATCCCAA
GCGATGTGCCGATGTGGAGGATCTGCTCTTGGACATGGCCAGTGGTGTGG
CAGACCTGGAATTCGTTCTCAATGTGCGCGACTGGCCGCAGGTGCACTTC
CTATCCGGCCTAAGTGGTCCGGTGTTTTCCTATTCCATCACGAATCGCCA
CCTGGACATCATGTACCCAGCATGGTCGTTTTGGACCACCACGGGACCCA
TCCTGCAGCACTATCCCCACGGTGTGGGTCGCTGGGACTGGATGCGAAAA
CATTTGGTGGCCAGGGCGTCGGAGTTGCCGTGGAGTGCCAAGCGCGCTAT
TGGTTTCTTTACGGGCTCACGATCCTCGCCAGAACGCGATAGTCTAGTCA
GGCTCTCGCAAAGGCGTCCAGACCTGGTTGATGCCCAGTACACGATACTA
GCGACGGATGCCGATCCCGTCGAGAAGATGCCTTTGGTCGAGCACTGCCA
ATTTAAGTATCTGTTCATTTTCGCGGTGTGACCGCCAGTTTCCGGGCTGC
GGCACATACTGCTCTGCGCTCGCTGGTACTTCATGTTGGCGACAGTGGCA
GGAGTTCTTCTACAGCCACTGAACCTGGGGTGCATTACGATCCCGTGACA
GCAACTCCGTATGTGGATTG
FMO13820.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31139-RA | 1312 | CG31139-RA | 66..1028 | 10..968 | 4505 | 98.3 | Plus |
| CG31139-RC | 1308 | CG31139-RC | 66..1024 | 10..968 | 4435 | 97.9 | Plus |
| rumi-RB | 1530 | CG31152-RB | 922..1032 | 805..913 | 190 | 81.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22747995..22748824 | 947..122 | 3780 | 98.7 | Minus |
| 3R | 32079331 | 3R | 22748880..22748991 | 121..10 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:51:14 has no hits.
FMO13820.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:23:41 Download gff for
FMO13820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31139-RA | 66..1028 | 10..968 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:49:39 Download gff for
FMO13820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31139-RA | 66..1028 | 10..968 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:49:39 Download gff for
FMO13820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22747974..22748824 | 122..968 | 98 | <- | Minus |
| 3R | 22748880..22748991 | 10..121 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:23:41 Download gff for
FMO13820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18573696..18574546 | 122..968 | 98 | <- | Minus |
| arm_3R | 18574602..18574713 | 10..121 | 100 | | Minus |
