FMO13821.5prime Sequence
832 bp (832 high quality bases) assembled on 2013-10-14
> FMO13821.5prime
TCAGTCGACATGGAAGATGTCCGCACTCTGCGGTATGATATCCAATGGGA
TGTTTTCGAGGGCATGCAAATAGTTGACATCAATTCAAAGTACTATGACA
TGGTGATCGAGTTCATGTGGTCCAATTCGTTTCTGAAAAGTCTTGTCTAT
GAGAGTCTGGGACTATTCGATTTGCCGGACATGAAACAGACTTATTCTTG
GTATGTGCGACACATCCTGCGAAACGAGTGCTCCGTGATGATGATTAGCG
AAGATGAAACGCAAATAAGGGCAGTGGGATTGCTGGAATGGATGACCGAG
GAATGGCACTCCTGGGTCTTCTTTCCCTCTTCGTTGCCCAGGAATCTGTT
CCAGCAGATCATAATGATGAAGAAGGAGCTCATCGATGCGACCAAAGCGA
ACATGGGCATCTCCACCTACGATGCACTGTTCGTCCACGAGATCGCCTTT
CCGGATGAGCTCTACTTTAACCGGGATTTCCTGTCGACCATCTTCGATGT
CTTTGGCTTTGTGGCCCAGCACATGCACATGCCGCGGGTCAGCTTCATCG
CCCTCAGCTCCGTGGACCAGGAGGCCGCCAGTCTGATCGATTACGAAGAG
ATCGGGCGGACTATCTACTCGATCTACAAGGTTGGCAACACCCGGCCCTT
TGACATCCTTCGCGAGCTAGACGAGATGTACGCACTGCTGTTTGAACTGG
CCGTCTCGCCGGTACTGAAGTACATTGAAATGCCCGGTTTCGAGGAGTTC
CACGAGGCCCTGGATGCCAGGTTGGGCCAAGGAGGCAGCCGAAAAGCGCC
ACGACGACGATATAGCAAGCTTTCTAGACCAT
FMO13821.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17375-RB | 981 | CG17375-RB | 116..918 | 10..813 | 3995 | 99.9 | Plus |
| CG17375-RD | 1280 | CG17375-RD | 116..922 | 10..813 | 3945 | 99.4 | Plus |
| CG17375-RC | 985 | CG17375-RC | 116..922 | 10..813 | 3945 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6804682..6805180 | 813..314 | 2450 | 99.8 | Minus |
| 2L | 23513712 | 2L | 6805245..6805360 | 315..200 | 580 | 100 | Minus |
| 2L | 23513712 | 2L | 6805429..6805542 | 203..90 | 570 | 100 | Minus |
| 2L | 23513712 | 2L | 6805597..6805677 | 90..10 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:51:18 has no hits.
FMO13821.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:23:42 Download gff for
FMO13821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17375-RB | 114..918 | 6..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:49:41 Download gff for
FMO13821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17375-RB | 114..918 | 6..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:49:41 Download gff for
FMO13821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6804682..6805179 | 315..813 | 99 | <- | Minus |
| 2L | 6805246..6805359 | 201..314 | 100 | <- | Minus |
| 2L | 6805432..6805542 | 90..200 | 100 | <- | Minus |
| 2L | 6805598..6805679 | 6..89 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:23:42 Download gff for
FMO13821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6804682..6805179 | 315..813 | 99 | <- | Minus |
| arm_2L | 6805246..6805359 | 201..314 | 100 | <- | Minus |
| arm_2L | 6805432..6805542 | 90..200 | 100 | <- | Minus |
| arm_2L | 6805598..6805679 | 6..89 | 97 | | Minus |
