FMO13822.5prime Sequence
615 bp (615 high quality bases) assembled on 2013-10-14
> FMO13822.5prime
TCAGTCGACATGCCGACTACACCACAGGATCTTGCCCTTGCCCACTCTCT
TGCTCAAAGACCTCCGACCGATAGCAGTGAGGCCAAGGAGCAGGAGGCCG
GCGAATCGGACAACCTGCCCAACCTGTGCACTTTGTCGCTGGACGAACTG
AAACAGCTGGACAGGGATCCCGAGTTCTTCGAGGACTTCATCGAGGAGAT
GTCCGTGGTGCAGTACCTGAACGAGGAGCTCGATTCAATGATGGACCAGG
TGGAGATTATATCAAGAGAGAACGAGTGCAAGGGCATTCATCTGGTAGAG
CTGAAGCGCCGACTCAGCGACGATTTTACAGCTTTAAAAAACCTAGGCGA
GAAATGCGACCGGCTGAACAAGAAGTACTTCAAGAAGTCGGATGAATACG
CGCCTCAGCATATCAGGATTGCAGCTTCCAATGCCGATGGCGACTGCGAT
CGTCACGTGGAGCACTTCCTGAACGGAAAGACCGACGTGCAGACTTTCCT
CAACACGTACCAGTGGTCGAAGAAGATCAGTACCGAGCGCAAGGCCAAAG
AGGAGCGCCTGGGCACCCAGCTCAGTGCTCTGGAGCGGGCCGGTATCGCA
AGCTTTCTAGACCAT
FMO13822.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mod(r)-RE | 1323 | CG17828-RE | 310..897 | 10..597 | 2940 | 100 | Plus |
| mod(r)-RD | 1331 | CG17828-RD | 318..905 | 10..597 | 2940 | 100 | Plus |
| mod(r)-RB | 1099 | CG17828-RB | 86..673 | 10..597 | 2940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 621891..622151 | 10..270 | 1290 | 99.6 | Plus |
| X | 23542271 | X | 622445..622625 | 417..597 | 905 | 100 | Plus |
| X | 23542271 | X | 622207..622358 | 266..417 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:54:26 has no hits.
FMO13822.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:25:10 Download gff for
FMO13822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod(r)-RB | 77..680 | 1..605 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:52:15 Download gff for
FMO13822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mod(r)-RB | 77..680 | 1..605 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:52:15 Download gff for
FMO13822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 621882..622146 | 1..265 | 98 | -> | Plus |
| X | 622207..622358 | 266..417 | 100 | -> | Plus |
| X | 622446..622632 | 418..605 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:25:10 Download gff for
FMO13822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 515915..516179 | 1..265 | 98 | -> | Plus |
| arm_X | 516240..516391 | 266..417 | 100 | -> | Plus |
| arm_X | 516479..516665 | 418..605 | 97 | | Plus |
