FMO13823.5prime Sequence
1025 bp (908 high quality bases) assembled on 2013-10-14
> FMO13823.5prime
TCAGTCGACATGTGCTCCCGCGACTGTTGCTCCGGACCAGGTGGCTCCAA
TCGAGGCAACACTTGCTCGGACAAGAAGGGCGCCAAGGCCGGCAGTCTCA
CTGGCGAGAAGATCATACCCACTCCACAGAGCCTGCTGTATCCCTATGAG
GTCATCGAGGAGATCGCCGACTTCATTACCAAGGGGTCCGGCATGCGCCC
CAAGATCGGCATCATCTGCGGCTCTGGGCTAGGCTCATTGGCCGATATGA
TCCAGGACCCGAAGATCTTCGAGTATGAGAAGATCCCCAACTTCCCGGTA
TCTACAGTTGAGGGCCATGCCGGACGACTGGTGGTCGGCACACTCGAGGG
CGCCACTGTGATGGCGATGCAGGGCAGGTTCCACTTCTACGAGGGCTATC
CGCTGGCCAAGTGCTCAATGCCGGTTCGCGTGATGAAGCTGTGCGGTGTG
GAATACCTGTTCGCCACCAATGCGGCTGGTGGAATCAATCCACGGTTCGC
GGTGGGCGACATCATGCTGATGCATGACCATGTCAACATGCTGGGCTTTG
CCGGAAATTCTCCGCTCCAGGGACCCAATGACCCACGCTTCGGACCCCGC
TTTCCCGCCCTGGTGAACTCGTACAACAAGGACCTAATCAACAAGGCCAT
CGAGATCGCCAAGGCCATGGGCATAGAGTCCAACATTCACGTCGGCGTAT
ACTCCTGTCTGGGTGGTCCCAACTACGAGACCATCGCCGAGCTGAACGCC
CTGCGCATGATGGGCGTGGATGCGGTGGGCATGTCCACCGTACATGAGTC
ATCACTGCACGGCACTGCGACATGAAGTATTCGCCTTCAGCCTCATCACA
AATAGTGCGCCACCGAGTACAGCGATAGAGACGATGAGCCACCACGATGA
GTTATGCTGTGCAGACAGCAAAGCTGCTGCGACTATCTCCGACTCATCGG
AAATCACTGCATCGCTGCAGCTTTCTAGACATCGGTGGCCGCGGCAGTAT
GCTATCTATCTATCTATCAAATCCA
FMO13823.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16758-RG | 1617 | CG16758-RG | 466..1377 | 10..911 | 4305 | 98.8 | Plus |
| CG16758-RF | 1245 | CG16758-RF | 94..1005 | 10..911 | 4305 | 98.8 | Plus |
| CG16758-RE | 1449 | CG16758-RE | 400..1209 | 112..911 | 3735 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2499720..2500462 | 877..138 | 3550 | 99.5 | Minus |
| 3L | 28110227 | 3L | 2502592..2502722 | 140..10 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:54:30 has no hits.
FMO13823.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:25:11 Download gff for
FMO13823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16758-RF | 92..993 | 7..901 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:52:17 Download gff for
FMO13823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16758-RF | 92..993 | 7..901 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:52:17 Download gff for
FMO13823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2499720..2500462 | 138..877 | 99 | <- | Minus |
| 3L | 2502595..2502724 | 7..137 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:25:11 Download gff for
FMO13823.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2499720..2500462 | 138..877 | 99 | <- | Minus |
| arm_3L | 2502595..2502724 | 7..137 | 99 | | Minus |
