FMO13825.5prime Sequence
827 bp (827 high quality bases) assembled on 2013-10-14
> FMO13825.5prime
TCAGTCGACATGTCGCATCATCAACACGTTCTTTCCGAGGCCGCTGCCCT
TCGTCTGATTAACGGTCTGGAGTCAGCCGGCAATGCCACAATGCCACTCG
GCGCTCAGCCGCCTCAGTCAGCGGCAGCTGAAGCAATCTGCTCGTCGCAA
ATCGTAGCATCGGCACATGGCACGCCCACTGCATCCACGGCAGCACTGGA
AATATCCTCAGCACGACAACGGATGCTGCGAAGTCACCTACAGGAGAGCC
TCCATTCGGCGAACGAAAGCGGCAACTCGTGCCGCATCTGCCGCTGGAAC
CGCAACGACATGGAGATCATCAAATGTCCCTGCAACTGCAAGGGCAGCGT
GGGCTACATCCACCTAAAGTGCTTGAAGCGCTGGATCATGCACAGGCGGG
ATAATCGCTGTGAGATCTGCAATGCGGTCTTTAATATCGCGGAGGAGCGG
GCCAGTCTGAAGCAAATGATCCGAACCTTCTGCTGCGGCCGTTGTTGCGG
CCTGATTGTGAAGCATCTGCTATTTAGCGCCTCGCTAATGCCACTAGCCC
ATATCATCTTGCAGCAGGTGCTGCAGTGCATGGATAATATGAATCAAGGC
AGCACCGATCAGTTAACCGTCCAGGAGGTGTTTGTCGCCTCTTGTGCCCT
TCTGACCTCCAGTGCACTTTTCTTCCACTTCTTTGAGTTTGTCACCACAC
GATTTATGCTCATCCGGAACATTCTCAGCCACTGGTGGATGTTTGGGCAG
CACCTCCGATTTTGAGCTGGTGGAGATTGAGGATGATTCCATCGATTTTT
TTCGATGATGCAAGCTTTCTAGACCAT
FMO13825.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17717-RA | 1092 | CG17717-RA | 202..999 | 10..809 | 3920 | 99.5 | Plus |
| CG17717-RB | 1074 | CG17717-RB | 202..981 | 10..809 | 3640 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6589491..6589833 | 10..352 | 1685 | 99.4 | Plus |
| X | 23542271 | X | 6590311..6590546 | 565..801 | 1135 | 99.6 | Plus |
| X | 23542271 | X | 6590032..6590251 | 351..570 | 1100 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:51:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 423..505 | 502..424 | 108 | 62.7 | Minus |
FMO13825.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:23:48 Download gff for
FMO13825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17717-RA | 193..1003 | 1..815 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:49:50 Download gff for
FMO13825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17717-RA | 193..1003 | 1..815 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:49:50 Download gff for
FMO13825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6590033..6590248 | 352..567 | 100 | -> | Plus |
| X | 6590314..6590557 | 568..815 | 97 | | Plus |
| X | 6589482..6589832 | 1..351 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:23:48 Download gff for
FMO13825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6484066..6484281 | 352..567 | 100 | -> | Plus |
| arm_X | 6484347..6484590 | 568..815 | 97 | | Plus |
| arm_X | 6483515..6483865 | 1..351 | 98 | -> | Plus |
