FMO13826.5prime Sequence
1064 bp (947 high quality bases) assembled on 2013-10-14
> FMO13826.5prime
TCAGTCGACATGAGTAGAACCATTATTATGACGCTTAAGGACATTGTGCA
TGTGTGGTCCAACGACCCGGGAGAACGGATGTGCCGAGCGAACAGAGTAT
CAACATGGTTCTCCGAGGTGCAGATGGGCCCACCCGATGCCATCTTGGGT
GTCACGGAAGCCTTCAAGAAGGACACCAACCCCAAGAAGATCAACTTGGG
CGCTGGCGCCTATCGCGATGACAACACCCAGCCCTTCGTGCTCCCCAGTG
TTCGGGAGGCCGAGAAGAGAGTGGTGAGCCGTAGTCTGGACAAGGAGTAC
GCCACAATCATCGGCATTCCCGAGTTCTACAACAAGGCCATCGAGCTGGC
ATTGGGCAAGGGATCCAAGCGTCTGGCGGCCAAGCACAACGTGACCGCCC
AGTCCATCAGTGGAACTGGAGCTCTGCGCATCGGAGCCGCCTTCCTGGCC
AAGTTCTGGCAGGGCAACCGCGAGATCTACATCCCGTCGCCATCGTGGGG
TAACCATGTGGCCATTTTCGAGCACGCTGGTCTGCCGGTGAACCGATACC
GCTACTACGACAAGGACACCTGTGCCCTGGACTTTGGCGGCCTGATCGAG
GATCTGAAGAAAATCCCCGAGAAGAGCATTGTTCTTCTGCACGCCTGCGC
CCACAACCCCACTGGAGTGGATCCCACTCTGGAGCAGTGGCGTGAGATCT
CGGCTCTGGTAAAGAAACGCAATCTGTATCCCTTCATCGACATGGCCTAC
CAGGGCTTCGCCACCGGAGACATTGACCGCGACGCCCAGGCGGTCCGCAC
CTTCGAGGCCGATGGGCCACGACTTCTGCCTGGCCCAGAGTTTCGCCAGA
CATGGATTGTATGGTGAGCGCGCTGGCGCCTTCACCGTGCTGTGCTCCGA
CGAGGAGGAGGCTGCTCGCGTGATGTCCCAGTGAGATCCTGATCCGTGGT
CTGTACTCCAATCCCCCGGGTGCACGGAGCTCGTATGCCGCCGAAAATCC
TCCACACCGAAGAACTTGCCGCCCAGTGGCTGAAAGAATTGTGAAACTGA
ATGCCGAACCGTAC
FMO13826.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Got2-RB | 1560 | CG4233-RB | 71..1119 | 10..1057 | 4750 | 97.4 | Plus |
| Got2-RA | 1575 | CG4233-RA | 175..1134 | 99..1057 | 4305 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1984974..1985403 | 1034..608 | 1580 | 93.8 | Minus |
| 2L | 23513712 | 2L | 1985471..1985721 | 609..359 | 1210 | 98.8 | Minus |
| 2L | 23513712 | 2L | 1985945..1986105 | 259..99 | 805 | 100 | Minus |
| 2L | 23513712 | 2L | 1985781..1985885 | 361..257 | 525 | 100 | Minus |
| 2L | 23513712 | 2L | 1986797..1986885 | 98..10 | 445 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:51:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 3619..3678 | 334..275 | 111 | 65 | Minus |
FMO13826.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:23:49 Download gff for
FMO13826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Got2-RB | 67..1114 | 3..1053 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:49:56 Download gff for
FMO13826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Got2-RB | 67..1114 | 3..1053 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:49:56 Download gff for
FMO13826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1984958..1985401 | 610..1053 | 94 | <- | Minus |
| 2L | 1985471..1985719 | 361..609 | 98 | <- | Minus |
| 2L | 1985782..1985883 | 259..360 | 100 | <- | Minus |
| 2L | 1985946..1986105 | 99..258 | 100 | <- | Minus |
| 2L | 1986797..1986889 | 3..98 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:23:49 Download gff for
FMO13826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1984958..1985401 | 610..1053 | 94 | <- | Minus |
| arm_2L | 1985471..1985719 | 361..609 | 98 | <- | Minus |
| arm_2L | 1985782..1985883 | 259..360 | 100 | <- | Minus |
| arm_2L | 1985946..1986105 | 99..258 | 100 | <- | Minus |
| arm_2L | 1986797..1986889 | 3..98 | 95 | | Minus |
