FMO13827.5prime Sequence
1028 bp (968 high quality bases) assembled on 2013-10-14
> FMO13827.5prime
TCAGTCGACATGTTGTCCTGTGCCTCTTTCAATAAACTGATGTATCCGTC
GGCCGCAGATGTTGCCAAACCGCCAATGGTGGGCTTGGAGGTGGAAGCTG
GATCCATTGGATCCCTGTCCAGTCTTCACGCCCTTCCATCGACCACCTCG
GTGGGCAGTGGAGCCCCCAGCGAGACGCAGAGCGAGATCTCCTCCGTGGA
TAGCGATTGGAGTGACATACGCGCCATCGCCATGAAGTTGGGCGTTCAAA
ACCCAGACGATCTCCACACGGAACGTTTCAAGGTGGATCGACAGAAATTG
GAACAGTTAATAAAAGCGGAGAGCTCCATTGAGGGAATGAATGGAGCTGA
ATATTTTTTCCATGACATCATGAACACTACGGATACTTATGTGAGCTGGC
CTTGCAGACTCAAAATTGGTGCCAAGAGCAAGAAGGATCCCCATGTGCGA
ATTGTGGGAAAGGTGGATCAGGTTCAGCGGGCAAAGGAGCGCATCCTTAG
CAGTCTTGACTCCAGGGGCACTCGAGTGATCATGAAAATGGACGTCAGCT
ACACGGATCACTCGTACATCATCGGACGAGGTGGCAACAACATCAAGCGC
ATAATGGACGACACGCATACCCATATCCACTTCCCCGACTCGAATCGCTC
CAATCCCACGGAGAAATCCAACCAGGTGTCGCTGTGCGGCAGCCTAGAGG
GCGTGGAGCGAGCCCGGGCTCTCGTTCGGCTCTCCACACCCGCTGCTCAT
CTCCTTCGAGATGCCCGTAATGGGACCCAACCAAGCCGCAGCCCGACCAC
GAGACTCCCTACATCAAGATGATCGAGACCAAGTTCAATGTTCAAGGTCA
TATTCTCCACGCGTCCAAATTGCATACTCGCTGGGTTTGGGTCAAGGGAT
CCGAGAAGATCGGCGCAAGTCCCGAGATGCCACCGCAGCTGCTGATCACT
TTCGCCTGTTGAAAAGTATGCAAGCAAAATTCTTATGAATGTCCAGGATG
GGAGATCTTCGCCGCCAGCATCACGAAA
FMO13827.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45084-RB | 4022 | CG45084-RB | 884..1895 | 10..1028 | 4555 | 97.4 | Plus |
| CG45084-RA | 3828 | CG45084-RA | 559..1570 | 10..1028 | 4555 | 97.4 | Plus |
| BicC-RA | 4022 | CG4824-RA | 884..1895 | 10..1028 | 4555 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16045065..16045391 | 516..844 | 1545 | 99.4 | Plus |
| 2L | 23513712 | 2L | 16044055..16044361 | 10..316 | 1535 | 100 | Plus |
| 2L | 23513712 | 2L | 16044920..16045001 | 436..517 | 410 | 100 | Plus |
| 2L | 23513712 | 2L | 16044788..16044857 | 367..436 | 350 | 100 | Plus |
| 2L | 23513712 | 2L | 16044421..16044472 | 315..366 | 260 | 100 | Plus |
| 2L | 23513712 | 2L | 16045839..16045954 | 845..959 | 225 | 87.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:51:36 has no hits.
FMO13827.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:23:52 Download gff for
FMO13827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BicC-RB | 551..1516 | 1..969 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:50:00 Download gff for
FMO13827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BicC-RA | 874..1839 | 1..969 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:50:00 Download gff for
FMO13827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16044788..16044857 | 367..436 | 100 | -> | Plus |
| 2L | 16044921..16045000 | 437..516 | 100 | -> | Plus |
| 2L | 16044045..16044361 | 1..316 | 98 | -> | Plus |
| 2L | 16044423..16044472 | 317..366 | 100 | -> | Plus |
| 2L | 16045066..16045392 | 517..846 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:23:52 Download gff for
FMO13827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16044788..16044857 | 367..436 | 100 | -> | Plus |
| arm_2L | 16044921..16045000 | 437..516 | 100 | -> | Plus |
| arm_2L | 16044045..16044361 | 1..316 | 98 | -> | Plus |
| arm_2L | 16044423..16044472 | 317..366 | 100 | -> | Plus |
| arm_2L | 16045066..16045392 | 517..846 | 99 | -> | Plus |
