FMO13830.5prime Sequence
1076 bp (981 high quality bases) assembled on 2013-10-14
> FMO13830.5prime
TCAGTCGACATGTTACCCTCTTGCTATGCCAATGGATCGATGCTGCCGGA
TAATGAGGAGCTGGTCAACTCCATGCTAGCGAATCCGGATTATCTCAGGA
CCCAGGTGTCACCCAATCCGCTGGCTCCAAGTGCCGTCGGAGGTGCGGGC
ATGGAGGGTCTGATGTGCGGATCGTTTTCACCGGCCTTCTACTACCAGGG
CATCGATAGCTTTCTGGCCCTGCACAACAACATCTGGGGATTGCCTATAT
CCTTTCTGCACAACTCCCATCGACCGGAAAAGCCTCCTTTCTCCTACATT
GCCCTCATCGCCATGGCCATCAGCAGTGCACCCAACCAGCGACTGACCCT
CAGTGGAATCTACAAGTTTATCATGGATAAATTCCCATATTACAGGGAGA
ACAAGCAGGGCTGGCAGAACTCCATTCGCCACAATCTGTCCCTCAACGAC
TGCTTCGTGAAGATTCCGCGGGACAAGAACACAATCGAGGATAACGACAG
TGCTGGGAAGGGAAGCTACTGGATGCTGGACTCATCGGCATCGGACATGT
TCGAACAGGGAAACTACCGCCGGAGGAGAACGCGCAGGCAGAGGCACTGT
GGCCATCCAAATCGCTACGAGAGGGAATCGGGAAAGGATTCAAATGATGG
CAACAGTAGTGCAGCAGAGATTCGCTCGCCCAGCGAACCGCTGAGTGACT
TCGATATCTTCTGCAACGAGCGGCCCAATTACTCCGACAGGATTACGGAT
CTGCACAGGCAGTACTTGTCCGTATCCCTGGGCTTCAACAGTCTGTTCAA
CAACGAGGCCCGCGGACTCCGACCACTGCCCGAGATCAGGGAATGCCCAG
ACGATGTGACGCCTCGTCCAGTTCCAGCAAGCAATGCAAAGTTCCATGGA
ACTGCACGAGGAGCTACATTCGCGAGCGCCTTTACTCCTCCTCCTCAATC
GACGGAAACCTCGTCATCGGTGCACCTGTCCTGCGAGCCTTTTAAGGCGA
TCAGGAAGGTGGTGATGACACTGGGAGACAGTCCATGGTCCGCAAGACGA
TCATGACCAGCCTGTTTACATCCGAC
FMO13830.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fd64A-RB | 1414 | CG1132-RB | 217..1248 | 10..1035 | 4755 | 98.2 | Plus |
| fd64A-RA | 1372 | CG1132-RA | 175..1206 | 10..1035 | 4755 | 98.2 | Plus |
| croc-RA | 2347 | CG5069-RA | 492..675 | 279..462 | 290 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4019094..4019464 | 10..380 | 1855 | 100 | Plus |
| 3L | 28110227 | 3L | 4020707..4021058 | 635..982 | 1465 | 98.3 | Plus |
| 3L | 28110227 | 3L | 4020397..4020653 | 381..637 | 1285 | 100 | Plus |
| 3L | 28110227 | 3L | 21475805..21475988 | 462..279 | 290 | 77.2 | Minus |
| 2L | 23513712 | 2L | 3826238..3826328 | 377..467 | 230 | 83.5 | Plus |
| 3R | 32079331 | 3R | 28583739..28583848 | 467..358 | 190 | 78.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:51:43 has no hits.
FMO13830.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:23:56 Download gff for
FMO13830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd64A-RA | 175..1166 | 10..995 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:50:08 Download gff for
FMO13830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fd64A-RA | 175..1166 | 10..995 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:50:08 Download gff for
FMO13830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4020397..4020652 | 381..636 | 100 | -> | Plus |
| 3L | 4019094..4019464 | 10..380 | 100 | -> | Plus |
| 3L | 4020709..4021073 | 637..995 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:23:56 Download gff for
FMO13830.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4019094..4019464 | 10..380 | 100 | -> | Plus |
| arm_3L | 4020709..4021073 | 637..995 | 97 | | Plus |
| arm_3L | 4020397..4020652 | 381..636 | 100 | -> | Plus |
