FMO13833.5prime Sequence
962 bp (868 high quality bases) assembled on 2013-10-14
> FMO13833.5prime
TCAGTCGACATGTGGACATCCGCAAAAAATGTACAATTTGAGAATTACCA
AAGAATTGCAGCGATGAGCAAGAAGAAAAGCAATGTGTGGCAGTACTTCT
ACAAGACATCCGGCACAGTGGCCACCTGTCTGCTGTGCAACAGGAACTAC
TCGAGGCGAGGACGCGGCACAACATGTCTGCGGAATCATCTGAAGAGCAA
GCACCCACCGGAGTTCCTATCTCTATCCGGGGACATAAAGTACCTGGACC
TGGTTAAGAGCGAGATCTCCATCGGTTCGCCACAGCACCCCACAGCCCAG
CTAGAATTGAATCTGCACGAAACAGATTCAGATCCATTGGACACCGAGGA
TATATCCTACAGCAAACGCTGTGATGAGAAGTTGGCCCTCATGCTACTAA
ATCACTCCTTTGAGTTCATTGAAGGACCAGGATTCGTAAATTTCATTAGG
ACGCTGCAGCCGCGGTACACGATTCAACCAAGGAGCTACTATGAGAAGAT
ACTGTGCGAGGATATACAAAGGAAAATGCATCAGCATTTGAAGCAACAGG
TGGATCTGCTGGATGCCATATCGTTGTCTACGAGTCTCTGGCGTGGTGAC
AAAGGCGAAGGACTGCTGAGCTTGTCCTGCTCCGGAATATCAAGGGATTT
TCAGACTCACCGCCTAATGCTGAAATGCGAGGCTCTGAATTACGAAAGCA
CTTCGAAGCTAGCTTGTTGCATTCGAGATCTTGTGCCCAGCTTGGCCATT
GAGTGCCCAAAGAGAAGATACACTGCGTAATCAGGACGAGATGACGGCGC
TGCCAGGTCCCTGCCCGATTGCAGTGTGCACCGCCTGCAGATGTGCGTCG
ATTTGCTTTGCATCGACGATACTGCAGATCTTCATCAGTGCAGCAATAGT
GACATTTGCGTCGTCTAGATGCCACGATCATCGAAATCATCAGAGATTCG
CTGAACGGAGAC
FMO13833.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13775-RB | 2142 | CG13775-RB | 25..973 | 10..937 | 4235 | 97.7 | Plus |
| CG13775-RA | 1945 | CG13775-RA | 25..973 | 10..937 | 4235 | 97.7 | Plus |
| CG13775-RC | 1648 | CG13775-RC | 37..676 | 319..937 | 2690 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6955672..6956219 | 862..319 | 2540 | 99.3 | Minus |
| 2L | 23513712 | 2L | 6956617..6956926 | 319..10 | 1550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:51:53 has no hits.
FMO13833.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:24:00 Download gff for
FMO13833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13775-RA | 16..901 | 1..878 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:50:20 Download gff for
FMO13833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13775-RA | 16..901 | 1..878 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:50:20 Download gff for
FMO13833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6955652..6956219 | 319..878 | 98 | <- | Minus |
| 2L | 6956618..6956932 | 1..318 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:24:00 Download gff for
FMO13833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6955652..6956219 | 319..878 | 98 | <- | Minus |
| arm_2L | 6956618..6956932 | 1..318 | 98 | | Minus |
