FMO13836.5prime Sequence
1090 bp (993 high quality bases) assembled on 2013-10-14
> FMO13836.5prime
TCAGTCGACATGGGCACCCACTACTTTGGCAACGTGCCCGCCGCCTACAT
CGAATTGGACGCTAACAGCATCAAGGAGGCCATCAAGAAGCAAGTTGAAT
ACTATTTCAGCGTCGATAATCTTACCGGCGACTTCTTTTTGCGCCGCAAA
ATGGACCCCGAGGGCTATATCCCAGTTACTCTGATCGCCTCGTTCCATCG
CGTTCTCGCACTGACCACCGATGTGGCTGTGATCGTAAACGCCATTAAGG
AATCGGATAAACTGGAGCTCTTTGAGGGCTATAAGGTGCGCACCAAGACG
ACACCGACCACCTGGCCCATCACGGAAGTGCCGGAGGTCAACGAAGGGGA
ACCGAAGGCTATTGGCACACTGGAGCAGGAGCAGTTGGAGCAGAATGATG
GTCAGGAAAAGCTGGAGGAGCAGACTGAGGCGGATTCCCCGCCGCCCATT
CTCACATCGGCGATGGCCACAAAGCCGCTGAACAGCATTCCGCCGCCGCC
AATGCCGCGAAACCCCCAGAATCTGGTGCCCAAAATGTTGCAGGATAAGC
AACAGTCGAGATCCTCGACCATTGCGGCTCTAAACTCTGTGAATGCGATC
AGTGCGCTGACCCAGCAAGTGGAGGGTGGTGCCGCTGAGCTGGCTGGACA
TTTGAGTGGACTAGCTGAGAGTGTGAAGCCCAAGTCGACATCGACGCCAG
ACAAGAGAAATGCTGCTTCAGCGGGCAATGGAGCTGGGTCAGCAGCTGCT
TTGGTGGCGGAGCCGGAGGGCATATGGAAAGAGGTAAAGAGACGCTCCAA
AACAAATGCTATCAAAGAAAACGCTACTACACCACCACAACAACACAGCC
ACCGCTTTCACAAACGCTCAACAACAATAACGATATGTCAAACGACACAC
CTCGTCCAGTCCAAGTCCTCGTCCACAACGCCCATCCAACGCCTCATCAT
CAGCCACTGTGTTGTGTAACCACGGAACATGCTTCCTCAGCACCAAAGTC
ACCACCAAAACCACACCACCTTCTACCGTCCTACCACACGAACAACAACA
TTAAATCTGATGCTGCTGTCAACCCGTTCCAATCCTATCC
FMO13836.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| larp-RH | 7919 | CG42551-RH | 2601..3661 | 9..1059 | 4845 | 98 | Plus |
| larp-RG | 7915 | CG42551-RG | 2597..3657 | 9..1059 | 4845 | 98 | Plus |
| larp-RF | 7070 | CG42551-RF | 1752..2812 | 9..1059 | 4845 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28322513..28323486 | 1059..96 | 4115 | 97.4 | Minus |
| 3R | 32079331 | 3R | 28323649..28323735 | 95..9 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:51:25 has no hits.
FMO13836.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:23:45 Download gff for
FMO13836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| larp-RF | 1752..2823 | 9..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:49:45 Download gff for
FMO13836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| larp-RF | 1752..2823 | 9..1067 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:49:45 Download gff for
FMO13836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28322502..28323486 | 96..1067 | 97 | <- | Minus |
| 3R | 28323649..28323735 | 9..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:23:45 Download gff for
FMO13836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24148224..24149208 | 96..1067 | 97 | <- | Minus |
| arm_3R | 24149371..24149457 | 9..95 | 100 | | Minus |
