FMO13837.5prime Sequence
1108 bp (991 high quality bases) assembled on 2013-10-14
> FMO13837.5prime
TCAGTCGACATGAGGACGTTGACGGAAAGCAGGCGGCGCCAAAGTGGCTC
CTCCGGGTGCAAAAAGGACTCCGAGTCGGATGACGATGAGAATACCATCT
GTAGCAGGGCGGCCATTAAGAGGAGTGTGGTCTACTATCTCAAGAACAGC
ACCCTCCATGGATTAAAGTACATCGCCGAAGAGAGCATCACCATTCCGGA
ACGCATCTTTTTTGGTCTTGCCTTTGTGCTGGTGGTGATCCTTTCCGTGT
TCTTCATATCCAACGTGTACGTAAAGTGGAGTGCTTCGCCCATAATCATT
TCGACCAGTGCCAAGCAAAAGCTGACCAGCAACATGCCATTTCCGGCGAT
CACGATCTGTAATCTCAACCAGGCGCTGCTAAGCAAAGTGGATCGCATTG
GACGGACCAGCACGAATTTCTCGCTGCTGATGGGTCTGTGTGACCAGGGC
GGGGACACGACCATCTCGTACATCGGCACCTGGAAGTACTTCAAGGCGAT
CCTGGTGGACGTGGCCCAGCCGTGCGAGAAAATGCTCCTGTACTGCAGCT
TCGGATCGCGCGAGGAGGACTGCTCCTGGCTCTTCACCTCCATACTGACG
GACGATGGGCTGTGCTGCAACTTCAATGCCCTGCATCCGTCGTATCTTAT
ACGGAACTACAGTGACGATGTGCGGCTGGAGACGGCTCATCCGAATACCC
GTTATGAGCTCATCGATTGGACACCAGAGAAGGGTTATGCCCGCAATTTG
CCGGAGTTCTACTTTCCGCGCACCTCGGGGGGCACGGGCATCCGCATGGG
TCTCACCGTCGTGCTGAACGCCTCCATAGCGGAGTATTACTGCACCAAGT
CGATGAGTGTTGGTTTCAAGGTTCCTTGTGCACAATCCCGCCGAGCTGCA
AAAGTGAGCAACTATGGCTTCGTTGTGACCGCGGGACGCGAAGGACACGG
AATAACTCATCCGAACCAGTCTATGAGGATGCCCTGGCCCACGATTACGG
TCAATTAAGAAATCGGGGGCGGCGCTGGCCTCTTCTCCGATGAGATGACT
GGCCTACTATCGGACATATTCGCGTAGAAACTGCGAAGCTGGAATGGCGA
GAGGCGAA
FMO13837.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:52:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ppk28-RA | 2190 | CG4805-RA | 240..1318 | 10..1096 | 5025 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:52:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16806633..16807302 | 203..872 | 3350 | 100 | Plus |
| X | 23542271 | X | 16806307..16806500 | 10..203 | 970 | 100 | Plus |
| X | 23542271 | X | 16807366..16807571 | 875..1086 | 440 | 91.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:52:06 has no hits.
FMO13837.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:24:04 Download gff for
FMO13837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ppk28-RA | 232..1327 | 3..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:50:35 Download gff for
FMO13837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ppk28-RA | 232..1327 | 3..1108 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:50:35 Download gff for
FMO13837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16806299..16806500 | 3..203 | 98 | -> | Plus |
| X | 16806634..16807300 | 204..870 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:24:04 Download gff for
FMO13837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16700332..16700533 | 3..203 | 98 | -> | Plus |
| arm_X | 16700667..16701333 | 204..870 | 100 | -> | Plus |
