FMO13838.5prime Sequence
1019 bp (933 high quality bases) assembled on 2013-10-14
> FMO13838.5prime
TCAGTCGACATGGATACGTTTCAACTGCTTTTAGCCGTGGGAGTGTGTTT
CTGGATATACTTCCTATGGAGTCGTCGCCGGCTCTATATGATGCACTTTA
AGATACCAGGACCAATGGGATTACCAATTCTGGGCATAGCCTTTGAGTAT
CTGATAACCTATAAACGTAAAATGAGCATACGAACCAAGTATATGGATAT
TTACGGCTCCACATGTTTGGTGTGGGTGGGACCGACGCCATTTGTAATCA
CTCGGGATCCGAAGATTGCCGAGGAAATCTTTTTGTCCCCAGAGTGCCTA
AATAGGAGCTCGATATTTTCCAAGCCGGTTAATAGCTGTACAGGAGATGG
ATTATTATCATTAGAGGCATCTAAATGGGTTGATCGTCGCAAGAACTTAA
ATCCGGCATTCAAGCAAAATGTTTTGCTGAGTTTTCTTCCCATCTTCAAT
TCTGAGGCGAAAACTTTAGTTGCCTTCCTGGACTCACTTGTCGGTCAGGG
TGAAAAAAAGGTCCGCGACGACATAGTGAGATGGTCTTTTAGAATAGCCA
CTCAAACCACAGTGGGAACTGATGTAAAGAAGGATGCGTCCTTCAAGAAC
GATTCAGTTTTGAAAAGTTACGAGACGTTTATGAAAATAATTGTTATGAA
TGTTTTGTTGCCATTCACTCACAACAAGATATTTTCAACACTGGGCGGAT
TTGAAACGCAGAAAGCTTTGGCCCAAGTCCAATGTTAACAAAATGATAGG
CACGATTGTTGACAAAAGTTAATGACAAAGCCAGAAAGTGGCTCACAGCC
TGAAATTACCTCTGTCATTAATAGGCCATCGAACTCCATCGGAATGGAGA
AATGTCCCGGGAAGAGTGCAATCGGATGCTGTCCTTCGTTGTCGCTGCTT
TGAGACACTGTGACCGGTGTATCACGCACTCATCTGCTGACCAATGATCC
CGGAAGCACAGACCACGTCTATCCAGAGCTCAAAAAGCCTGTTCCCGTGG
ACCGGTGACTTGAAAGTGA
FMO13838.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:52:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp313a3-RA | 1777 | CG10093-RA | 157..1167 | 9..1011 | 4510 | 97.4 | Plus |
| Cyp313a1-RA | 1623 | CG3360-RA | 93..343 | 48..298 | 205 | 72.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:52:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12238688..12238888 | 367..167 | 990 | 99.5 | Minus |
| 3R | 32079331 | 3R | 12238447..12238633 | 553..367 | 935 | 100 | Minus |
| 3R | 32079331 | 3R | 12238951..12239110 | 168..9 | 800 | 100 | Minus |
| 3R | 32079331 | 3R | 12238121..12238247 | 754..627 | 590 | 99.2 | Minus |
| 3R | 32079331 | 3R | 12237878..12238067 | 934..754 | 505 | 94.2 | Minus |
| 3R | 32079331 | 3R | 12238307..12238381 | 628..554 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:52:10 has no hits.
FMO13838.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:24:05 Download gff for
FMO13838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313a3-RA | 157..1114 | 9..959 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:50:41 Download gff for
FMO13838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313a3-RA | 157..1114 | 9..959 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:50:41 Download gff for
FMO13838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12237854..12238066 | 755..959 | 93 | <- | Minus |
| 3R | 12238121..12238247 | 627..754 | 99 | <- | Minus |
| 3R | 12238309..12238381 | 554..626 | 100 | <- | Minus |
| 3R | 12238447..12238632 | 368..553 | 100 | <- | Minus |
| 3R | 12238688..12238888 | 167..367 | 99 | <- | Minus |
| 3R | 12238953..12239110 | 9..166 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:24:05 Download gff for
FMO13838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8063576..8063788 | 755..959 | 93 | <- | Minus |
| arm_3R | 8063843..8063969 | 627..754 | 99 | <- | Minus |
| arm_3R | 8064031..8064103 | 554..626 | 100 | <- | Minus |
| arm_3R | 8064169..8064354 | 368..553 | 100 | <- | Minus |
| arm_3R | 8064410..8064610 | 167..367 | 99 | <- | Minus |
| arm_3R | 8064675..8064832 | 9..166 | 100 | | Minus |
