FMO13839.5prime Sequence
977 bp (848 high quality bases) assembled on 2013-10-14
> FMO13839.5prime
TCAGTCGACATGATATTGCTCTGGGCGATCGTTCTTATATCGAGTGTGGA
TCGAACAAATGCTCGATGTCTAGAATCTGTGCACTTGGAACACGGTTCGA
CGGAAATAGTAAATGGATCCATTATTTTTCATTGCGATCAAGGATACTTT
CTACAAGGATCGAAAGTGTTCACCTGCGATCGCGGTATTCCTCGAGGGAA
AAAACCATTTTGCGCCAAAAGCGGTTGCCAGGAATACGAACAAATACAGA
ACGGATTTGTTTTAAATGCTCCTATGAAAGCTAAGATCATATGTTCGGAT
GGCCATGGGTTGGTTGGAAATCGCATTGCCTATTGCGATGGCGAGAAGTG
GAGCACCCAGTTGGGATCCTGCGCATTAAGACGCCAGACGATCGATGTTT
CCTGTGATTTCGAGAGCGAGGATATGTGCGGCTGGACGGCGGAATTGAGC
TTCTTGGGAACTTGGAAACGGGTCAGTACGGTGGCCGACTTTCACTCTGA
GAAAACGGGTCCCCAAAAAGATCACACGTTCCAAAACCAATCCATCGGAC
ACTACGTGCGCATGGAGACGGAAAGCGATGCTTTTGGAACCTACCACTTC
CTATCGCCACTGTATCCCAAGGAGCTCAGTTTGAGTGGCGCCTGCTTCCA
GTTTCACTACTTCATGTTCGGCAGCGGAGTGGGTAGCCTGCTGGTGTCCA
TAAAACCCGTTTCGGTGACTATAGGAGACATATTTAAAACAAACCATCCC
TACAAGTTCGACCAATTCGTGATGACTGGATCACAAGTTGCCAGTGGCTG
GAGCACACGATCGATATCAATAGATGGATGAGACTTCCAAGTGATCTTTA
CGCCACGATGGAGGTCCCATACGGAAAATATTGCATCGACGACGTGAGCT
GATGGCAGCTAGGAATGTGCCAGAGGTCTACTTCATCGAAGAACCAAAAA
CATAGAGATTCGAATATACACGAATCA
FMO13839.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:52:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sr-CIV-RA | 1390 | CG3212-RA | 97..1048 | 10..950 | 4380 | 98.2 | Plus |
| Sr-CII-RB | 2369 | CG8856-RB | 745..1131 | 316..699 | 305 | 72.8 | Plus |
| Sr-CII-RA | 2043 | CG8856-RA | 419..805 | 316..699 | 305 | 72.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:52:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3523144..3523672 | 746..218 | 2630 | 99.8 | Minus |
| 2L | 23513712 | 2L | 3523753..3523960 | 217..10 | 1040 | 100 | Minus |
| 2L | 23513712 | 2L | 3522863..3523077 | 950..747 | 405 | 91.2 | Minus |
| 2L | 23513712 | 2L | 4122126..4122545 | 298..714 | 280 | 71.7 | Plus |
| 2R | 25286936 | 2R | 12210313..12210699 | 699..316 | 265 | 71.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:52:14 has no hits.
FMO13839.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:24:07 Download gff for
FMO13839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sr-CIV-RA | 93..1048 | 3..950 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:50:44 Download gff for
FMO13839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sr-CIV-RA | 93..1048 | 3..950 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:50:44 Download gff for
FMO13839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3522863..3523077 | 747..950 | 92 | <- | Minus |
| 2L | 3523144..3523672 | 218..746 | 99 | <- | Minus |
| 2L | 3523753..3523964 | 3..217 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:24:07 Download gff for
FMO13839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3522863..3523077 | 747..950 | 92 | <- | Minus |
| arm_2L | 3523144..3523672 | 218..746 | 99 | <- | Minus |
| arm_2L | 3523753..3523964 | 3..217 | 98 | | Minus |
