FMO13840.5prime Sequence
830 bp (830 high quality bases) assembled on 2013-10-14
> FMO13840.5prime
TCAGTCGACATGGCACCACACGATCGCGACTTTGGTCACAGTGGACGTGG
CGGTCGCGGAGGCGATCGAGGCGGCGATGATCGGCGAGGAGGCGGCGGCG
GAGGCAATCGCTTCGGTGGCGGCGGTGGCGGTGGCGATTACCACGGCATA
AGGAATGGACGCGTCGAGAAGCGACGCGATGACCGCGGAGGCGGCAACCG
ATTTGGAGGTGGTGGTGGATTCGGGGATCGCCGAGGAGGAGGTGGCGGCG
GCAGCCAAGACCTCCCCATGCGTCCGGTCGACTTCTCCAACCTGGCTCCC
TTCAAGAAGAACTTTTACCAGGAGCACCCTAACGTAGCAAACCGATCGCC
CTACGAAGTTCAGAGGTATCGCGAAGAGCAGGAGATCACCGTGCGCGGAC
AGGTGCCGAACCCCATCCAGGACTTCTCCGAGGTCCATCTGCCCGACTAC
GTCATGAAGGAGATCCGCCGACAGGGCTACAAGGCCCCCACCGCTATCCA
AGCGCAGGGCTGGCCTATCGCCATGAGTGGCTCGAACTTCGTCGGCATTG
CCAAGACGGGATCCGGAAAGACCCTGGGCTACATCCTGCCCGCTATTGTC
CACATCAACAACCAGCAGCCGCTGCAGAGGGGGCGACGGACCTATCGCCC
TCGTGCTGGCCCCCACTCGGGAGCTGGCCCAACAGATCCAGCAGGTGGCC
ACCGAATTCGGTTCCTCGTCGTATGTTTCGCAACACCTGCGTCTTCGGCG
GCGCCCCGAAAGGGCGGCCAAATGCGGGATCCTGCAGCGCGGCTGCGAAA
TCGTCATTGCCACACCCCGGACGCCTTATT
FMO13840.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:52:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rm62-RH | 2760 | CG10279-RH | 301..1116 | 10..830 | 3950 | 99.1 | Plus |
| Rm62-RM | 3411 | CG10279-RM | 293..1108 | 10..830 | 3950 | 99.1 | Plus |
| Rm62-RL | 3793 | CG10279-RL | 298..1113 | 10..830 | 3950 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:52:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6004325..6005126 | 817..12 | 3815 | 99.4 | Minus |
| 3L | 28110227 | 3L | 6954427..6954628 | 701..499 | 245 | 75.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:52:18 has no hits.
FMO13840.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:24:08 Download gff for
FMO13840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rm62-RL | 292..1113 | 1..830 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:50:47 Download gff for
FMO13840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rm62-RL | 292..1113 | 1..830 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:50:47 Download gff for
FMO13840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6004313..6005132 | 5..830 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:24:08 Download gff for
FMO13840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1830035..1830854 | 5..830 | 98 | | Minus |
