FMO13844.5prime Sequence
716 bp (716 high quality bases) assembled on 2013-10-14
> FMO13844.5prime
TCAGTCGACATGTACGGAGAAACTACGCTAAATAAAAACCACGTCATTAA
ATTTATCAAATTGAAAATTAACAACTGCTTGGGCTGCGATGAAGTGGAGA
TAAACTTCTCGAAAGCGGACAATGTACACATTATCATCTACAGTTTGGTC
ACGGATATGGCAAAGGACCTACCGGCTGTAACGCCCGTGGCCCAGGCCAT
CCTACTCCTCTGCTCCCTGACCTATCCGGATTCAGATAGCCTTGAAACGA
TTCCGCAGCTGAAAATTGGCAAGGGAAGTGTCTCGATGAGCTTCAAAGTG
TATCCCGTGAATAAGGAAGAGGAGACGGAGCCAGAGTCGGAGAGCGACCT
GGATGAGGGACTGTCCACCTCGAAACAGGCCCTGGAGCGAATGGTGCAGC
GAGCGGAGCGCAAGGCCAAGGAGGCGTCCACAAGGAACGTACATTCCAAA
GGCATCTATGTGAACGTAGAGCGAAGATTCGATATGTACTTCGCCCTGGA
CACCGTTTCATATTATATAAACGGCGGCAAACGCCAATCGTGCCCCCTCC
CGGAGTTCCACGCCAAGTTCTTTGTGCGGCCCCAGCACTCGATCAATCTT
CTGAGGCAGCTGCACGAGAAATGCTCCGGGAACTGGCTAAGGTCATCCAA
AAGCCGACGGCGATGGAGACTCCTTCCAAAAAAGTTCATAGCACCCCCGT
ACAGCCTCGTTTCGAG
FMO13844.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:52:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ord-RB | 2178 | CG3134-RB | 26..709 | 10..697 | 3260 | 98.7 | Plus |
| ord-RA | 3915 | CG3134-RA | 1763..2446 | 10..697 | 3260 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:52:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23273046..23273665 | 681..61 | 2935 | 98.9 | Minus |
| 2R | 25286936 | 2R | 23273720..23273774 | 64..10 | 260 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:52:22 has no hits.
FMO13844.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:24:09 Download gff for
FMO13844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ord-RA | 1763..2453 | 10..706 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:50:48 Download gff for
FMO13844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ord-RA | 1763..2453 | 10..706 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:50:48 Download gff for
FMO13844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23273055..23273665 | 61..672 | 99 | <- | Minus |
| 2R | 23273724..23273774 | 10..60 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:24:09 Download gff for
FMO13844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19160578..19161188 | 61..672 | 99 | <- | Minus |
| arm_2R | 19161247..19161297 | 10..60 | 100 | | Minus |
