FMO13845.5prime Sequence
1131 bp (954 high quality bases) assembled on 2013-10-14
> FMO13845.5prime
TCAGTCGACATGGGAGAAGTTCCGAAAATCAAGAACTTGCCACAGGTGAT
CGAGCCTCACTTGCCAGAAGGGTGTACGCTGGACTCGTACTCCACTAGCT
ACCTAACCAAGCCCGGGGACAACTATGGCAGCATTATGTTATCTGTCCAA
GCGAAAATCCGCAGTGCAGACGGTGGTATTCGGGATTTGCCGCTGATAGC
CAAGTTGCCGCCCCTCACCAACGACCTTTACTGGCAGATCTTCCAACCCG
AGCGGACTTGCATTACGGAGAACGCGGTGTACCAGTATCTGTCGCCGGAG
CTGGATAAGTTGCAGCTGGAGTCAGGCATTCTGCCCGCCCAAATTTTTGA
CGGCTTTCCGCGATACTACGGCTCCCGCGTATCACTGGACAACCGCGCTA
CAAAAGTGGATCGGGATGCCGTTCTGGTCCAAGAGAACGTCACTACGCGC
GGCTATCGACCTGGTAACAGACACCGGCCGTACAATCTCGCAGAAACTGT
GCTTATTCTGCACTATTTGGCCCAATACCATGCCCTGCCTATCGCCCTGC
GCCTGAAAAAACCGCAGGTGTACGAGGAGTATGTGCGGCCATACTTCAAG
AAGTTCGATATGAACTCTAATATTGATCAGGCCGAGACGGAAATAATGAA
CAAGGAAATTTTAAAGGACATAAAGTTGGTGACTAGCGACGAACGGGACG
TAAATCGCGTCAAGGAGCTGCTGGACATTTTCCAGGCTTTTCAAGCTAGC
AACGATGTGGACGACGGCCCATTCCCTACCCTCGTGCACGGAGACCTGTG
GATCAACAATATGATGCTAAAAATACGGTGAGGAAAGCACCCCCACTCAA
GGTGAAAATTGTTGACTTTCAAATCGCGCAGTACGGATCATTGGTAGCAT
GATATCATCTTTTGTGCTGTTCTCAAGGTGTGGAACGTAAATTGTTCTCG
AAGGACAATTTCTACAATTTCCTGACCATTTATTACAACGCCTTTCATTC
AGACTTTGCGCAGCGGTGATTGGTGGAACACAGCACCTAACCATACGATT
GTTTTCTCCCAAGAAGTTACCAGCCAACTGAACCGTTGCAGTGCCCTCAC
CGCGATCTTTATGATGAGGTTAATCTGGCTG
FMO13845.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:52:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31974-RC | 1380 | CG31974-RC | 86..1193 | 10..1131 | 4840 | 96.6 | Plus |
| CG31974-RB | 1838 | CG31974-RB | 544..1651 | 10..1131 | 4840 | 96.6 | Plus |
| CG31974-RD | 1908 | CG31974-RD | 605..1721 | 10..1131 | 4740 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:52:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 141675..142487 | 822..10 | 4050 | 99.9 | Minus |
| 2L | 23513712 | 2L | 141430..141595 | 1015..843 | 500 | 95.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:52:25 has no hits.
FMO13845.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:24:12 Download gff for
FMO13845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31974-RB | 539..1540 | 2..1015 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:50:49 Download gff for
FMO13845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31974-RB | 539..1540 | 2..1015 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:50:49 Download gff for
FMO13845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 141430..141609 | 828..1015 | 94 | <- | Minus |
| 2L | 141671..142492 | 2..827 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:24:12 Download gff for
FMO13845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 141430..141609 | 828..1015 | 94 | <- | Minus |
| arm_2L | 141671..142492 | 2..827 | 99 | | Minus |
