FMO13846.5prime Sequence
898 bp (891 high quality bases) assembled on 2013-10-14
> FMO13846.5prime
TCAGTCGACATGACGACCTACTTCAACTACCCCAGCAAGGAGCTGCAGGA
TGAGCTGCGCGAAATCGCCCAGAAAATCGTTGCCCCCGGCAAGGGAATCC
TCGCCGCCGATGAGTCCGGCCCAACCATGGGCAAGCGTCTGCAGGACATC
GGCGTGGAGAACACCGAGGACAACCGCCGTGCCTACCGTCAGCTGTTGTT
CAGCACTGACCCCAAGCTGGCCGAGAACATCTCTGGAGTGATCCTGTTCC
ACGAGACCCTCTACCAGAAGGCCGATGATGGCACCCCCTTCGCCGAGATC
CTGAAGAAGAAGGGAATCATTCTGGGCATCAAGGTCGACAAGGGTGTTGT
CCCACTGTTCGGCTCTGAGGATGAGGTCACCACCCAGGGTCTGGATGACC
TGGCCGCCCGTTGCGCCCAGTACAAGAAGGACGGTTGCGACTTCGCCAAG
TGGCGTTGCGTCCTGAAGATCGGCAAGAACACCCCATCCTACCAGTCGAT
CCTGGAGAACGCCAATGTCCTGGCCCGCTACGCCTCCATCTGCCAGTCGC
AGCGCATCGTCCCAATTGTGGAGCCCGAGGTTCTGCCCGATGGCGATCAC
GATCTGGACCGCGCCCAGAAGGTCACCGAGACCGTCCTGGCCGCCGTCTA
CAAGGCCCTGAGCGACCACCACGTCTACCTGGAGGGTACTCTGCTGAAGC
CCAACATGGTCACCGCCGGTCAGTCGGCCAAGAAGACACCCCCGAGGAGA
TCGCCCTGCCACCGTGCAGGCTCTGCGCCGCACCGTTCCCGCCGCCGTTA
CTGGCGTGACCTTCCTGTCTGGAAGTCAGTCCGAGAGGAGCCACGTCACC
TGATGCATCAACACGTTCCTTGATCGCCCATGGACCTCACTTCTCGTA
FMO13846.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:51:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ald-RM | 2102 | CG6058-RM | 278..1179 | 10..898 | 4155 | 98.3 | Plus |
| Ald-RJ | 1614 | CG6058-RJ | 277..1178 | 10..898 | 4155 | 98.3 | Plus |
| Ald-RL | 1615 | CG6058-RL | 278..1179 | 10..898 | 4155 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:51:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26257224..26258020 | 804..10 | 3885 | 99.7 | Minus |
| 3R | 32079331 | 3R | 26414213..26414832 | 91..710 | 505 | 72.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:51:56 has no hits.
FMO13846.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:24:01 Download gff for
FMO13846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ald-RL | 278..1131 | 10..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:50:24 Download gff for
FMO13846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ald-RL | 278..1131 | 10..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:50:24 Download gff for
FMO13846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26257225..26258020 | 10..803 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:24:01 Download gff for
FMO13846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22082947..22083742 | 10..803 | 99 | | Minus |
