FMO13849.5prime Sequence
990 bp (902 high quality bases) assembled on 2013-10-14
> FMO13849.5prime
TCAGTCGACATGAAACAAATGGCGGCACAAAAAGCCTGGACGGATGAGGA
GCGTCTGGAGCTGGCGGCCCAGCTGGACGCGGAACTGGATGCGTTTATCG
ATGGCCTGGAGAAGAAACGTTACGAGGAGGGCTGGCCGGAGGACCGCTGG
CAGGAGGAGATGGACAAGCACCCGTTCTTCATGAAACGTGCTCCTCAGCC
AGGGGATGACGTGCATCCGATGTTCGAGGGTCTGCAGAAGCTCAAGTACG
ATCCGGAGGAGAACACGCGCGACGAGCTGGCGCTCAACTACAAGGAGGAT
GGCAACTTTTACATGAAGCACAAGAAGTTCCGCATGGCAATCTACAGCTT
TACCGAGGGCATCAAGACCAAGACGGACAATCCCGACGTGCTAGCCGTTC
TCTACAACAACCGCTCGGCGGCTCACTTCTTCATCAAGAACTACAGATCC
TCGCTGAGCGACGCCCAGCGAGCTCTGTTCTACAAGCCAGACTACACAAA
GGCCCGCTGGCGGTCGGCACAGTGTGCGTACGAGCTGGAGAGGTTCGATC
TGTGCACCCAGATGTGCGAGGAGCTGCTCGAGGTGGACGTCGACAACGAG
GTGGCCATCGCGCTGCTGCACAAGAACAAGATGAAGAAGCTCGAGATAGA
ACGCAATCAGCGCAAGGAAGCTGCCGAGGCAAAGCGACGGCTTACACGCT
TCCACAGACTCCGCGACGCCATCGAGCAGCGCGCCATTAAGTTTGACGAT
CAAAAAGTTGGCAAAAGGGACGTCCTCAGTGAGGAGCTCCTTTATCCCAA
GTTTCTGCCTTTGGAGGACCATCCGGTGCCCTAGACGAGGACGGCAGCAC
GCTGATCTGGCCGGCTGCGTTCTCCTACCCCGAGTTCCTGTACAGCGACT
TTTATCAGCAGCTGCCCGGAGACCACCACATGGCGGGAATTGCCTGGCGA
CGCCTGCCTCCACGAAAAGCTGCCCATACCGAACAGCACA
FMO13849.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:52:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dpit47-RB | 1284 | CG3189-RB | 58..1019 | 10..974 | 4585 | 98.8 | Plus |
| Dpit47-RA | 1417 | CG3189-RA | 191..1152 | 10..974 | 4585 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:52:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6661299..6661928 | 639..10 | 3150 | 100 | Minus |
| 2R | 25286936 | 2R | 6660929..6661243 | 953..638 | 1345 | 97.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:52:28 has no hits.
FMO13849.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:24:14 Download gff for
FMO13849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dpit47-RA | 182..1166 | 1..989 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:50:51 Download gff for
FMO13849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dpit47-RA | 182..1166 | 1..989 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:50:51 Download gff for
FMO13849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6660896..6661241 | 640..989 | 95 | <- | Minus |
| 2R | 6661299..6661936 | 1..639 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:24:14 Download gff for
FMO13849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2548401..2548746 | 640..989 | 95 | <- | Minus |
| arm_2R | 2548804..2549441 | 1..639 | 99 | | Minus |
