FMO13852.5prime Sequence
554 bp (478 high quality bases) assembled on 2013-10-14
> FMO13852.5prime
TCAGTCGACATGAATAAGGAAGAAAATTCCTCCGAAACACGACCATCTTC
TCAAGAACTCCACAGTCCGCAGCGGCATTGCTACACTCCGCCGCCGGCGC
CGATGCACGGACAGGCGCCTCCACCTACATCAACGGGCGTGGCCCCGCCC
ACACAGCCACCGCCCCCTCATCCCGCCGCCCCAAACGTGCCCAATGGTCG
ATTGCTGAGCTGGAATCACAGTGCCGCTGCAGCTGCTGCGGCGGCGGCAG
CCCAAGCGGCAGCCAACTCCATGAACCACTCGTCGGCGGCGGAGGGTTCA
TCGATGACCCGGATTAAGGGTCAGAACCTGGGCCTCATCTGCGTGGTGTG
CGGCGACACCAGCTCGGGAAAGCACTACGGAATCCTAGCCTGCAATGGCT
GCTCCGGATTCTTCAAACGCAGCGTGCGGCGGAAACTCATTTATCGCTGC
CAGGCGGGAACGGGACGCTGTGTGATGGACAAAGCTCATCGGAAATCAAT
GCCACGCCTGCAGGCTCAAGAAGTGCCTTCAAATGGGAATGAACCAGGAC
GCCG
FMO13852.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:52:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr51-RC | 2089 | CG16801-RC | 277..820 | 10..554 | 2655 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:52:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15333575..15333967 | 54..446 | 1965 | 100 | Plus |
| 2R | 25286936 | 2R | 15336083..15336187 | 446..551 | 435 | 96.2 | Plus |
| 2R | 25286936 | 2R | 15331601..15331646 | 10..55 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:52:38 has no hits.
FMO13852.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:24:20 Download gff for
FMO13852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr51-RC | 269..820 | 1..554 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:51:06 Download gff for
FMO13852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr51-RC | 269..820 | 1..554 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:51:06 Download gff for
FMO13852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15331593..15331646 | 1..55 | 92 | -> | Plus |
| 2R | 15333577..15333967 | 56..446 | 100 | -> | Plus |
| 2R | 15336084..15336188 | 447..554 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:24:20 Download gff for
FMO13852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11219098..11219151 | 1..55 | 92 | -> | Plus |
| arm_2R | 11221082..11221472 | 56..446 | 100 | -> | Plus |
| arm_2R | 11223589..11223693 | 447..554 | 94 | | Plus |
