FMO13858.5prime Sequence
825 bp (825 high quality bases) assembled on 2013-10-14
> FMO13858.5prime
TCAGTCGACATGGTGGACAAAATTGAAATGAGCCTCGACGACATCATTAA
GTCCACACGCTCGCAAAAAAAGCCGCAAGCCGCCCGCGGCGGACCAGGTG
GCGCCCGAAAAACGGGCGGACAGCAGCGTTTTGCTGGTGGAGCCCGCCGC
GGCGGAGCCAATGCCGGCGGCTCGCCCAGGAAGCCAGGAAGCGTGCTCAA
GGGCCCGCGAGGAGGAGTGGCCGCCGGAGCCGTTCAGAAGGCCAAGTTCC
CACGGGGCGATGTGAACAGCGCTTGGAAGCACGATATGTACGACGGACCG
AAGAGGGGTGCCGTCGGTGGAGGATCTGGACCCACCCGCCTCATCGTCGG
TAACCTGGACTACGGCGTATCCAACACGGACATCAAGGAGCTCTTCAACG
ACTTTGGTCCGATAAAGAAGGCGGCAGTGCACTACGATCGCTCCGGTCGC
TCGTTGGGCACCGCTGACGTGATTTTCGAACGTCGCGCCGACGCCTTGAA
GGCCATTAAACAGTACCATGGCGTACCTTTGGACGGACGCCCTATGACCA
TTCAGCTGGCCGTCTCAGACGTGGCCGTGTTGACCCGTCCCGTAGCCGCC
ACCGATGTCAAGCGTCGCGTGGGTGGTACTGCACCAACTTCATTCAAGCG
TGGTGGTGGCCAAGCTGGTGGCACGGCGCGTCGCGGCTTCAAACGTCCGG
TCGGTGGCAAGCCGGCGGCAGGCGGCCAGCGACGGGAGCGCAAGGCCCCG
CCCACTGCTGAGGAGCTGGACGCCGAACTGGACTCATACATCAACGACAT
GAAGATCGCAAGCTTTCTAGACCAT
FMO13858.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ref1-RA | 1328 | CG1101-RA | 179..976 | 10..807 | 3990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7079963..7080209 | 256..10 | 1235 | 100 | Minus |
| 3R | 32079331 | 3R | 7079253..7079456 | 458..255 | 1020 | 100 | Minus |
| 3R | 32079331 | 3R | 7078819..7079020 | 658..457 | 1010 | 100 | Minus |
| 3R | 32079331 | 3R | 7078256..7078408 | 807..655 | 765 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:54:40 has no hits.
FMO13858.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:25:17 Download gff for
FMO13858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ref1-RA | 171..979 | 1..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:52:21 Download gff for
FMO13858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ref1-RA | 171..979 | 1..811 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:52:21 Download gff for
FMO13858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7078252..7078407 | 656..811 | 98 | <- | Minus |
| 3R | 7078822..7079019 | 458..655 | 100 | <- | Minus |
| 3R | 7079254..7079455 | 256..457 | 100 | <- | Minus |
| 3R | 7079964..7080217 | 1..255 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:25:17 Download gff for
FMO13858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2903974..2904129 | 656..811 | 98 | <- | Minus |
| arm_3R | 2904544..2904741 | 458..655 | 100 | <- | Minus |
| arm_3R | 2904976..2905177 | 256..457 | 100 | <- | Minus |
| arm_3R | 2905686..2905939 | 1..255 | 98 | | Minus |
