FMO13862.5prime Sequence
1060 bp (965 high quality bases) assembled on 2013-10-14
> FMO13862.5prime
TCAGTCGACATGCCACGCAACCCTGTTGAACCATTTCAAGAACCCCTATA
CCAACATACCCTCGATGGCAGCAGACAGAAACATTCGTCGGTGACACAGG
ATGTGCTCCCGCCCTCTTATAACAAGGACGATGAATATCAATGTTGCAAC
ATGCCGGAGTGCCCGAATAATAGCATACCCCTTCAGATTCCGAAAAATTC
TTTACCTCGCTTTCAACCTCTAGTCAACGTATCTCAACATTCCCGATCCC
ATAGCTTCCCCAGGCAAAATTACAGAAATAATAAGACTAGTCATCATAAT
TCCACCCACAACCACTCGGACAAAAGGATCAAACCGCAAACACCGTGCGA
GTTAAAAGTACCGAGCGGAAACCGTTGTCCCACCGATCAGAGCAGTAATC
ATGATACGGCTACTGGCTGCAGAAATAACACCTCAATCGATTGGAATAAT
AGCTCTCAAGTTGGCATGAACTATGGCGAGTTTCAAAGACGCCAATTGCT
GTTGCAAAAAATTCAACAGCAGCAATATCAGCAACAGCAAGCTAGACAGC
AGAATCAAGCGAATTTATCTTGGTTGGAAGATGAAGATCCCATTGAATTT
GCACCTGATCTCAATAGCACGAGAATAAATCAAGATGATCGTCACCAGCA
ATCCCGCCTGCAACCAAACTCAATTTGTCAGAAATGCAACTCTCGCCAGC
AACAAAGTGCGTCACGATCAATTCTTGAGTGCGATCAAACACCAGAAATG
GTGCGTAATCAAACGAAGTACGAAACCCAAAACTAATGAAACAAGTTATC
TTCAGCCACCAGAGACTTTGCGAAACGCTAGATGTAAACCACAGGCGAAC
CAGAGTCTCAGAAACCAGTCGCAAGATATTGCCAGATGTCTCTATGATCA
GATATCCAATTGTGAGCATCTATGAGTAAGATAACAAATATACTCGGATC
CCCCGAAAGTCATAATAGTTGCTGTAGTCGTGCTCTACTGCTGGTGACGA
AGTATGAGGATAAGTCCAACTATTGCCTGTTGTGCCAACACGTCTGCCCT
CGAAATCAAG
FMO13862.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32181-RB | 2276 | CG32181-RB | 365..1423 | 10..1059 | 4770 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17760720..17760976 | 345..601 | 1285 | 100 | Plus |
| 3L | 28110227 | 3L | 17760401..17760574 | 139..312 | 870 | 100 | Plus |
| 3L | 28110227 | 3L | 17761034..17761142 | 601..709 | 545 | 100 | Plus |
| 3L | 28110227 | 3L | 17760146..17760241 | 10..105 | 480 | 100 | Plus |
| 3L | 28110227 | 3L | 17761368..17761456 | 777..865 | 445 | 100 | Plus |
| 3L | 28110227 | 3L | 17761202..17761261 | 709..768 | 300 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:54:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6844 | 484..558 | 131 | 67.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1126 | 492..558 | 128 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2287..2450 | 387..558 | 119 | 56.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1072..1162 | 464..552 | 117 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2405 | 464..558 | 114 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6793 | 493..558 | 114 | 69.7 | Plus |
FMO13862.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:25:22 Download gff for
FMO13862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32181-RB | 360..1423 | 1..1060 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:52:30 Download gff for
FMO13862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32181-RB | 360..1423 | 1..1060 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:52:30 Download gff for
FMO13862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17760141..17760241 | 1..105 | 96 | -> | Plus |
| 3L | 17760314..17760346 | 106..138 | 100 | -> | Plus |
| 3L | 17760401..17760574 | 139..312 | 100 | -> | Plus |
| 3L | 17760628..17760660 | 313..345 | 100 | -> | Plus |
| 3L | 17760721..17760975 | 346..600 | 100 | -> | Plus |
| 3L | 17761034..17761141 | 601..708 | 100 | -> | Plus |
| 3L | 17761202..17761261 | 709..768 | 100 | -> | Plus |
| 3L | 17761361..17761456 | 769..865 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:25:22 Download gff for
FMO13862.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17753241..17753341 | 1..105 | 96 | -> | Plus |
| arm_3L | 17753414..17753446 | 106..138 | 100 | -> | Plus |
| arm_3L | 17753501..17753674 | 139..312 | 100 | -> | Plus |
| arm_3L | 17753728..17753760 | 313..345 | 100 | -> | Plus |
| arm_3L | 17753821..17754075 | 346..600 | 100 | -> | Plus |
| arm_3L | 17754134..17754241 | 601..708 | 100 | -> | Plus |
| arm_3L | 17754302..17754361 | 709..768 | 100 | -> | Plus |
| arm_3L | 17754461..17754556 | 769..865 | 98 | -> | Plus |
