FMO13863.5prime Sequence
1041 bp (950 high quality bases) assembled on 2013-10-14
> FMO13863.5prime
TCAGTCGACATGCCTTCCAAGAAATCGCCCAGGCCCACTTACTGCGAGCC
TAATCCGTACACGCGATTCTTTAATGCCCATAAATCTCTGCCCCCGGATA
AAAACGGTCAAAAGCAAGAAATCTACAATCGGGAAAGTGTTTATGTCCTG
TCGAATAAGTCACGTGGCAAACGGCGATCGGGACGGGAAAATAACCAGCC
AACTTGGCGACGACGCGGTGGCGGCGTTAACGAGGACCACATCATGGTCG
TTACGCAGGATAACACGCAACAGCAGAGGGATAAGCCATTGCTGACCGCC
TCCCAATTGGATTCCATTTGCTATGACGTTATTAAAGAGCCACCGATGCA
ATTTCACGTGAATGGCACCGACATAGTGCCCAGTATTCGCGGCCTCAGAC
TGAGTGTCTGCGTGGAGCACACGCGATTTCAGCTGGTGGCCAAGGTTACC
AGGAACATGGGATTTCAGCATGTGCCCGAGCATAGATTGTGGAACATCCA
ATGGTCGGACTCCACGCCCCATCATGACCTGCTGCGTAATATGAAACGCT
TTCAGCAGATTAACCATTTTCCAGGCATGGTGGAGATATGCCGCAAGGAT
CTGCTGTCAAGAAATTTGAATCGCATGCTCAAAATGTTTCCCGGCGATTA
TCGCATATTCCCCAAAACCTGGCTAATGCCAACCGATGCCTACGATGTAG
CCATTTATGCGAACAAACACAAGCGCACTTTTATCCTAAAGCCTTATTCG
GCGGGTCAAGGACGTGGCATCTGGATAACCACCGATCTTCGCACTGTGGG
CAAACGGGAGAAGCTCATCTGCCAACTTACATAGAACGGCCCCTACTTAT
AGATGGGCTACAGTTTGATCTGCGCGTCTACACACTTGTCACCTCGGTGG
ATCCACTACGCATTTTTGTGTACAATGAGGTCTGGCACCGCTTGCCAACC
CAGAAATATGTGCCACCAACCACCGGTAATAGTCACTATGTGTTCATGCA
ACTGACCCACTAATGCTGCAATCGCCGACTCACAATTACAT
FMO13863.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16716-RC | 2829 | CG16716-RC | 103..1132 | 10..1036 | 4710 | 97.7 | Plus |
| CG5987-RA | 2472 | CG5987-RA | 752..1142 | 541..930 | 260 | 72.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19593892..19594568 | 10..686 | 3310 | 99.3 | Plus |
| 2R | 25286936 | 2R | 19594644..19594797 | 687..839 | 705 | 98.7 | Plus |
| 2R | 25286936 | 2R | 19594854..19595042 | 839..1027 | 580 | 89.5 | Plus |
| 3R | 32079331 | 3R | 27250099..27250199 | 641..541 | 205 | 80.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:54:56 has no hits.
FMO13863.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:25:25 Download gff for
FMO13863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16716-RC | 96..1121 | 1..1027 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:52:32 Download gff for
FMO13863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16716-RC | 96..1121 | 1..1027 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:52:32 Download gff for
FMO13863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19593885..19594568 | 1..686 | 98 | -> | Plus |
| 2R | 19594644..19594797 | 687..839 | 98 | -> | Plus |
| 2R | 19594855..19595042 | 840..1027 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:25:25 Download gff for
FMO13863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15481390..15482073 | 1..686 | 98 | -> | Plus |
| arm_2R | 15482149..15482302 | 687..839 | 98 | -> | Plus |
| arm_2R | 15482360..15482547 | 840..1027 | 92 | | Plus |
