FMO13871.5prime Sequence
1054 bp (942 high quality bases) assembled on 2013-10-14
> FMO13871.5prime
TCAGTCGACATGGGAAAAGATAATCAGATAAGTGTCATTTATGCCCCTTT
GCAGGCTAACAAACTCAAGGACAACACACCACCGTACGATGCACCGCCGC
CCACGCCGATCAGCAAGGTCCTGAACATCACCGGCACTCCGATCGTTCGC
AAGGAGAAGCGCCAGACCAGCGCCCGGTACAATGCCTCCAAGAACTGCGA
ACTGACGGCCCTCATTCCGCTAAACGAGAAGACCGCCGCCAGTGAACGTG
AGGAGCTGTTCATACAGAAGATCCAGCAATGCTGCACACTGTTCGACTTC
TCCGAGCCGCTCAGCGACCTCAAGTTCAAGGAGGTGAAGCGGGCGGCTCT
GCACGAAATGGTCGATTTCCTCACCAACCAAAATGGCGTAATAACCGAAG
TTATTTACCCGGAGGCGATCAATATGTTTGCTGTCAACCTTTTCCGAACT
CTGCCGCCATCGTCCAACCCGAATGGTGCCGAATTCGATCCGGAGGAGGA
TGAGCCCACGTTGGAGTCCTCGTGGCCGCATCTGCAACTCGTTTACGAGC
TGTTCTTGCGCTTCTTGGAGTCACCAGATTTTCAACCAAGCATGGCAAAA
CGTTTTATCGACCATCAATTTGTATTACAACTATTGGATTTATTCGATTC
GGAGGATCCACGTGAACGTGATTTCCTGAAGACTGTTTTACATCGCATCT
ATGGAAAATTTTTGGGCTTGAGAGCATTTATTAGAAAGCAGATCAACAAT
GTCTTTTACAGATTTATTTATGAAACGGAGCATCATAATGGCATAGCCGA
TTGTTGGAAATCCTGGTAGCATTATCAATGGCTTTGCTCTGCCGCTTAAG
AGGAGCATAAACAATTTTACTTAAGTATTGCTGCCATTGCACAAAGCCAA
GAGCCTCTCGGTCTACCATCCGCAGCTCACTATTGTGTGTGCAGTCTGAG
AATGATCCTAGCTTATCGGAGGCGGTCATCAAGCTACTAATTGGCCAGAC
GCCCAGTCCAGGAGTATGTTTTTTGACAGACTGAGGACTGCTGACGTAAT
TGAC
FMO13871.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:55:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PP2A-B'-RC | 1823 | CG7913-RC | 8..993 | 7..982 | 4660 | 98.8 | Plus |
| PP2A-B'-RQ | 3380 | CG7913-RQ | 1101..2040 | 53..982 | 4430 | 98.7 | Plus |
| PP2A-B'-RP | 2870 | CG7913-RP | 1101..2040 | 53..982 | 4430 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18175602..18175937 | 426..761 | 1680 | 100 | Plus |
| 3R | 32079331 | 3R | 18171481..18171703 | 7..229 | 1100 | 99.6 | Plus |
| 3R | 32079331 | 3R | 18175333..18175529 | 230..426 | 985 | 100 | Plus |
| 3R | 32079331 | 3R | 18176002..18176235 | 760..983 | 695 | 94.4 | Plus |
| 3R | 32079331 | 3R | 27566644..27566783 | 782..643 | 205 | 76.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:55:00 has no hits.
FMO13871.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:25:26 Download gff for
FMO13871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PP2A-B'-RC | 2..1002 | 1..988 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:52:33 Download gff for
FMO13871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PP2A-B'-RC | 2..1002 | 1..988 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:52:33 Download gff for
FMO13871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18176004..18176242 | 762..990 | 94 | | Plus |
| 3R | 18175603..18175937 | 427..761 | 100 | -> | Plus |
| 3R | 18171475..18171703 | 1..229 | 98 | -> | Plus |
| 3R | 18175333..18175529 | 230..426 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:25:26 Download gff for
FMO13871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14001726..14001964 | 762..990 | 94 | | Plus |
| arm_3R | 14001325..14001659 | 427..761 | 100 | -> | Plus |
| arm_3R | 13997197..13997425 | 1..229 | 98 | -> | Plus |
| arm_3R | 14001055..14001251 | 230..426 | 100 | -> | Plus |
