FMO13872.5prime Sequence
975 bp (836 high quality bases) assembled on 2013-10-14
> FMO13872.5prime
TCAGTCGACATGGCCAAGAAGCTGCCCTCCGATGTGCATCCAGATGCGGT
CTTCGCCTGCAACGAGCTCGATCTCAGCGAGGTGCAGGTGTACGGATTCG
ATTACGACTACACGCTGGCCTGCTATAAGCCCATCCTGGAGGACCTGCTG
TACAATCTGGCTCGCGAGATGCTGGTGAAGAGGTTCCGCTACCCGGAGGA
CATCCTCCAGCTGGAGTACGAACCGAACTTTGCGGTACGCGGCCTGCACT
ACGACGTGGAAAAGGGGCTGCTGGTGAAACTGGACAGTTTCCTGCAGCTA
CAGCTGGGCTCGGTATACAGGGGACGTACCAAAGTGGAGGCGGATGAGGT
GCTGAAGCTCTACCACAACCGCCTGCTGCCTATTGCCTACGTGGAGGGGC
CGAACAATAGCTACAGGCATAACACCAACTCCAAAATGGTGCAATTGGCC
GACCTGTTTTCTGTACCTGAAATGTGCCTGCTGTGCAATGTAATCGAATA
TTTTGAACGCAATCGAATCGACTACAATCCAGAGATTGTTTTCCATGACA
CCAGGACCGCCATGGGCTCCTGCCATCCCATTATGCACGGCAAGGTGATG
CGGAACACTGAGAAGTACATAGAACGAAACCCGAAGCTGGTCAAGTTCTT
CGAGAAGCTGCAGCAGGCGGGCAAGAATCTCTTTCTAGTCACCAATAGCC
CGTACTCGTTTGTAAACTGTGCATGTCCTTTCTGGTCGGCGCCAACTGGC
GTGATTTCTTCGATGTGGTCATCGTGCAGCCCGCAAACAAAGTTCTTACC
GGATGATCTCGACCATAAGCTATTCGACGAGCGAACGCAGTCACACCTAT
GGGATCGGGTTATTCAGCTGGAGAAGGAAAATCTACTACGAGGGTCGGTG
GAGAACAGCTTCCAGAGCTGAGGCTGGCGTGGTTCCACCTCTGGTGCTCT
ATTTCCGGAAATCCATCGTACGCGA
FMO13872.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:55:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1814-RC | 1673 | CG1814-RC | 126..1078 | 8..955 | 4310 | 97.7 | Plus |
| CG1814-RB | 1880 | CG1814-RB | 339..1285 | 14..955 | 4280 | 97.7 | Plus |
| CG1814-RA | 1929 | CG1814-RA | 388..1334 | 14..955 | 4280 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:55:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9579962..9580366 | 13..417 | 2025 | 100 | Plus |
| 2R | 25286936 | 2R | 9580451..9580747 | 417..713 | 1485 | 100 | Plus |
| 2R | 25286936 | 2R | 9580826..9581005 | 721..893 | 500 | 91.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:55:03 has no hits.
FMO13872.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:25:28 Download gff for
FMO13872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1814-RC | 121..1097 | 1..974 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:52:35 Download gff for
FMO13872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1814-RC | 121..1097 | 1..974 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:52:35 Download gff for
FMO13872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9579960..9580366 | 9..417 | 99 | -> | Plus |
| 2R | 9580452..9580747 | 418..713 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:25:28 Download gff for
FMO13872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5467465..5467871 | 9..417 | 99 | -> | Plus |
| arm_2R | 5467957..5468252 | 418..713 | 100 | -> | Plus |
