FMO13873.5prime Sequence
1083 bp (977 high quality bases) assembled on 2013-10-14
> FMO13873.5prime
TCAGTCGACATGGACCAGTATGGTGGCAACGCCAGCCCGGGAAATTTGTT
CTCCAGCTCCATCACTGCCTTTCACGACAAGGACAGCCTAGAGCCACGTC
CTGGTAACAAATACAACCCGCGTCGCTTCAGCGCCCATCTGGAGGAGCAT
CTGGTCAAGGAAAAGCGTATCACCAAATTCCCTCTGGTGGGCGCCCTGGT
CCACAAGGCACTGCGGCGTCGGGAGGAGGCAGAGGACGAGAAGGTGCAGA
TCACAGGTCCGGAGGACAACCAACACCAACAAAACAACAACAACAACGAT
TGGGAGCCGAACAGGATGGTGCTACCGTTTGGACTTGGACCCGATGGCCA
TCACGTGGATGCCATTCAGAGTGCTCCGGCGCCCAGTGCGCCCCCCGCCC
ACATGATGCCACCAGCCTACGCCCGGGGACAAACAAACATATACACAGGT
GTTCCGATCATCGTGAATCCCTACATAGACTTCATCGTGGTCAACGGGGA
TGATCGATACATGATCAGATGCGAACGAAAGTCGGTACTCGAGCGGAGCG
TGGAGCTGGCCAAGCTTATCCACGCCGGTCCGAACAGCGGTCGCAAGAGC
GACAATCATTTCCAGATACTCAACGTGGACAAGAACGACTTCGAGCTGAT
CGTCCGCTACATGGAGAAGCACTTCATTCCCTACCGCGATCACAAGCACC
TGCTCAAGATACTGGAGCTATCCGATCGCTTCAACGTTCCAGATCTGATA
ATCTACTGCATTCGCGAACTTGATCTCAGAATCTCGAGCGCCACGGCACT
GGACATCTTCAAGGCGCTGTGGTTCTACCAGGGCATCGCACTGACCAACC
AGCACCAAACGGTGATCACCACCCAGGAGACGGGCCAGCAGCTGGCCAGG
AAGAATGCGACCAAGCGAAGCGCGGCCAAGCAGCTGGCGGCTGCCAGCTT
CTCAGTCACGAAACGGATCGGAAGGCGATGAGCCAGCAGAACTCATTCCT
TACCAAATCCCTTACCACGAGATTACGCTGGCGCTTGCTGCCAACCGCCT
CCAGCTGATCGATTTGACGCCGAGCTGCAGCCT
FMO13873.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8398-RA | 2878 | CG8398-RA | 143..1235 | 7..1081 | 4800 | 97.2 | Plus |
| CG8398-RD | 2094 | CG8398-RD | 333..1384 | 48..1081 | 4595 | 97.1 | Plus |
| CG8398-RE | 1911 | CG8398-RE | 151..1201 | 49..1081 | 4590 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6615897..6616600 | 48..751 | 3490 | 99.7 | Plus |
| 3L | 28110227 | 3L | 6616666..6616868 | 747..946 | 855 | 97 | Plus |
| 3L | 28110227 | 3L | 6609467..6609508 | 7..48 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:53:06 has no hits.
FMO13873.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:24:29 Download gff for
FMO13873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8398-RA | 138..1236 | 1..1083 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:51:32 Download gff for
FMO13873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8398-RA | 138..1236 | 1..1083 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:51:32 Download gff for
FMO13873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6609462..6609508 | 1..48 | 91 | -> | Plus |
| 3L | 6615898..6616596 | 49..747 | 99 | -> | Plus |
| 3L | 6616667..6617019 | 748..1083 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:24:29 Download gff for
FMO13873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6602562..6602608 | 1..48 | 91 | -> | Plus |
| arm_3L | 6608998..6609696 | 49..747 | 99 | -> | Plus |
| arm_3L | 6609767..6610119 | 748..1083 | 91 | | Plus |
