FMO13876.5prime Sequence
999 bp (828 high quality bases) assembled on 2013-10-14
> FMO13876.5prime
TCAGTCGACATGTCGGGTAAAAACAGAAAACGCACGGCCAGCAGCAGCAG
CAGCGGTGAGGAGCCGGACAGCGAGGAAGAGTCTCGCCTAAAGGACCTGC
AGGAGCGCGACGAGTTCGCCAGCCGGCTGAAGAAGCGGGATGACGATCGG
ACGCGCAATGTGGTTGATTCCACCGGCGGACGAAGGGCCATCGAGGAGGC
CACCAAGCGACTGAAGCTTGAGCATGAGGATCGGGACAAGATAGTGCCTC
ACCTGCGTCTGCAGTCGCGTCGCCAGTACCTGGAGAAGCGCAAGGATGAC
AAGGTGGCCGAGCTGGAGGCGGACATCCTGGACGATGAGTACCTCTTCGA
TGAGAGCGTCCTGACCAAACGGGAGAAGGAGGAGCGCGAGTACAAGAAGC
AACTGCTGAACATCGCCAAGGAGCACGAGAAGGCGCGGGAACTAGAGCGC
ATCCAGCGTTATAATATGCCGCAGGACCTGAAAAAGGGAGAGCGATCTGA
ATACGTTGAGGTTGATGAGTTTGAGAAGCAACCCAACTCAGAGCAGAAGA
AATGGGAGGCTGACAGCTGGCTTCGGCGCGTTTCCATTTCGGCGCGAAAG
ATGCCAAGGCGGAGGAGGAGTATGAGCTGCTACTTGACGATCAAATCGAT
TTCATCCAAGCCCTTACCCTGGACGGAAGTCGAGAGAAATCATCTAGCCG
ACAGCCCGAACTCACGGAGAAGGAACGCAAACGTTTGACATTGGACGAAA
CCAGAGATCACTGCCGTTTATCCGTTCAAGGGAGGATCTGATTGCTGCTG
AAGGAACATCAGGTGCTTCATCATCGAAGGAAGAACAGGCTCGGGCAAAA
CGGACCACAGGTGCCGCAGTACCTCGTGGAAGCTGGGTTTCACCAAAGAA
CAAGAAGATGATCGGATGCACGCACCACGTCGGGGGGGCCGCCATGCGGG
GGCACAACGCCGTGGGCCGAAGGAAATGGGCGTGTAAGCTTGGTCAACG
FMO13876.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)37Cb-RA | 2791 | CG10689-RA | 54..1038 | 10..999 | 4385 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19126574..19126923 | 359..10 | 1750 | 100 | Minus |
| 2L | 23513712 | 2L | 19125889..19126315 | 924..497 | 1625 | 96.5 | Minus |
| 2L | 23513712 | 2L | 19126376..19126512 | 496..360 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:53:22 has no hits.
FMO13876.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:24:35 Download gff for
FMO13876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)37Cb-RA | 54..1038 | 10..999 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:51:38 Download gff for
FMO13876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)37Cb-RA | 54..1038 | 10..999 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:51:38 Download gff for
FMO13876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19125818..19126315 | 497..999 | 94 | <- | Minus |
| 2L | 19126376..19126512 | 360..496 | 100 | <- | Minus |
| 2L | 19126574..19126923 | 10..359 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:24:35 Download gff for
FMO13876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19125818..19126315 | 497..999 | 94 | <- | Minus |
| arm_2L | 19126376..19126512 | 360..496 | 100 | <- | Minus |
| arm_2L | 19126574..19126923 | 10..359 | 100 | | Minus |
