FMO13877.5prime Sequence
1019 bp (921 high quality bases) assembled on 2013-10-14
> FMO13877.5prime
TCAGTCGACATGTATAATATATATGTGCTTAAAAAGCGACTGGCATACAT
TATTTCTCGTCATACATATATGTATATGCTCAAAAAACGTAATGGCACTG
GGCCATTTACCTTTAGTTTTGCAGGCATGGAAAGTCCCTGTGAATCCGAA
AGTTCGCTGGACGGCGGCACCATGCTGCCACCAAGCCCAGTTTCCCGGGA
GCAGCTCCAGAAGAGGATCGAATCGCTTACCCAGCAGAACAAGGTGCTGA
AAGCCGAACTGGATACCTTCAAGACCAAGTGCAAAGTGGTGCAAGAGGAG
AATCGCTGCCTCAAGCAAGCCTCAGTCATCATTCAAGCCAAAGCCGAGCA
GGAGGAAGAATACATCTCAAACACGCTGCTAAAAAAGATTCAGGCCCTCA
AAAAGGAGAAGGAGACTCTGGCGCACCACTACGAGCGCGAGGAGGAGTGT
CTGACCAACGATCTCTCCCGGAAGCTCGACCAGCTGCGTCAGGAGAAGTG
CAAGCTGGAGCAGACACTTGAGCAGGAGCAGGAGTGCCTCGTCAACAAGC
TTATGCGCAAGATTGAGAAGCTCCAGGCGGAGACGGACAACAAGCAGACC
AATCTCGAGCAGCTGCGCCGCGAAATGGTCGAGTTGGAGAACACGCTTGA
GCAGGAACAGGAAGCTCTTGTAAACAAGCTGTGGAAGCGCATGGACAAGC
TGGAGACCGAGAAGCGTTCGCTGCAAATCAAGCTGGATCAGCCGGTTTCC
GATCCGACTACGCCGCGAGACATCACAACAACGCCCATGCCAATGGTGGC
GATACGGCCACCAGTTTGAGTGCTCATATCCAGATTCTGCGCTCCGAAGT
GCTTCGCTATCGCTCCGACCTGGCGAGCGCTCAGAAGGAGCCACTATCAA
AACACATGCAGTTTGCGCAGGAGGAGAGTCGATTCGCGAGGAAACGCCTC
GCCTTCAGCGCAAGGCTATAGCAGAAGTGTGAGCACCGCGAAACCCTATT
GCCGACCCCTCCGATACGG
FMO13877.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-RA | 2482 | CG6664-RA | 308..1204 | 115..1011 | 4095 | 97.7 | Plus |
| CG6664-RB | 2552 | CG6664-RB | 380..1274 | 117..1011 | 4085 | 97.7 | Plus |
| CG6664-RC | 2603 | CG6664-RC | 436..1325 | 122..1011 | 4060 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17014238..17014904 | 999..334 | 2915 | 97.5 | Minus |
| 3L | 28110227 | 3L | 17015140..17015373 | 243..10 | 1125 | 98.7 | Minus |
| 3L | 28110227 | 3L | 17014987..17015077 | 333..243 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:53:26 has no hits.
FMO13877.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:24:37 Download gff for
FMO13877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RA | 306..1178 | 110..984 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:51:40 Download gff for
FMO13877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RA | 306..1178 | 110..984 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:51:40 Download gff for
FMO13877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17014253..17014904 | 334..984 | 98 | <- | Minus |
| 3L | 17014987..17015077 | 243..333 | 100 | <- | Minus |
| 3L | 17015141..17015378 | 2..242 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:24:37 Download gff for
FMO13877.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17007353..17008004 | 334..984 | 98 | <- | Minus |
| arm_3L | 17008087..17008177 | 243..333 | 100 | <- | Minus |
| arm_3L | 17008241..17008478 | 2..242 | 97 | | Minus |
