FMO13878.5prime Sequence
1005 bp (888 high quality bases) assembled on 2013-10-14
> FMO13878.5prime
TCAGTCGACATGGCGCTGGTGACGGTGCAGCGCTCTCCCAGTGTGGCGGG
CTCCTGCTCGAATTCGGATGGCGAGTCCGAGGACGACGAGGGCAATAGCA
AAGGAAACGATCGCAGCGAGTGCTTCTTTGCCGGCAAGGGAACCGCCCTG
GTACTGGCTCTTAAGGATATCCCGCCCCTGACGCAAAGCGAGCGTCGCCT
GAGCACCGACTCCACCCGCTCCAGTAACAGTACGCAAAGCAACAACTCGG
ACATCCAGCTCCACCTGCAATCAATGTTTTACCTGTTGCAGCGCGAGGAC
ACGCTAAAGATGGCTGTCAAGTTGGAGTCACAGCGGTCCAACCGCACGCG
CTATCTGGTGATTGCATCGCGTAGTTGTTGTCGGAGCGGCACCAGCGACC
GTCGGCGCCACCGGATCATGCGTCACCACTCGGTAAAAGTTGGTGGATCC
GCGGGAACAAAGTCGTCCACCTCCCCGGCGGTCCCCACGCAGCGTCAGCT
GTCCGTTGAGCAGACCGCCACAGAGGCCAGCAGCAAATGTGATAAAACAG
CAGACAAGGAAAACGCAACGGCGGCCGGCGACAACAAGAATACCTCGGGC
ATGGAGGAGTCCTGCCTGCTGGGCATAGACTGCAACGAGCGGACCACCAT
TGGCCTGGTGGTGCCCATCCTGGCGGACACCACAATTCACCTGGATGGCG
ATGGCGGATTCAGCGTCAAAGTGTACGAAAAAACGCATATATTTAAGCCG
GTCTCAGTGCAGGCCATGTGGTCCGCGCTGCAGACGCTGCACAAAGTGTC
GAAAAAGGCTCGTGAGACAACTTCTATGCCAGTGGACCCTCCCACGACTG
GCTATCCCAGCTACGAGAGGCGCATCGAGTCGGAACAGTTCTTGTCTGAA
CGAGTGGAAATGCCATGGACCGCTCCGAAAGCCCACGAACCACTCTCTGC
TGGATGCTTACGAAACAAACCCCCGGAAAGGAAGAAGCGGAAGGGTCTTT
AGAAT
FMO13878.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssh-RD | 4419 | CG6238-RD | 483..1449 | 10..979 | 4490 | 98 | Plus |
| ssh-RA | 4780 | CG6238-RA | 483..1449 | 10..979 | 4490 | 98 | Plus |
| ssh-RC | 4186 | CG6238-RC | 306..1216 | 66..979 | 4210 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24942819..24943211 | 704..312 | 1965 | 100 | Minus |
| 3R | 32079331 | 3R | 24943275..24943522 | 313..66 | 1240 | 100 | Minus |
| 3R | 32079331 | 3R | 24942250..24942398 | 920..770 | 545 | 96.7 | Minus |
| 3R | 32079331 | 3R | 24942459..24942527 | 772..704 | 345 | 100 | Minus |
| 3R | 32079331 | 3R | 24944417..24944474 | 67..10 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:53:30 has no hits.
FMO13878.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:24:38 Download gff for
FMO13878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssh-RA | 477..1463 | 2..992 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:51:41 Download gff for
FMO13878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssh-RA | 477..1463 | 2..992 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:51:41 Download gff for
FMO13878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24942237..24942397 | 771..933 | 95 | <- | Minus |
| 3R | 24942461..24942526 | 705..770 | 100 | <- | Minus |
| 3R | 24942819..24943210 | 313..704 | 100 | <- | Minus |
| 3R | 24943276..24943521 | 67..312 | 100 | <- | Minus |
| 3R | 24944418..24944480 | 2..66 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:24:38 Download gff for
FMO13878.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20767959..20768119 | 771..933 | 95 | <- | Minus |
| arm_3R | 20768183..20768248 | 705..770 | 100 | <- | Minus |
| arm_3R | 20768541..20768932 | 313..704 | 100 | <- | Minus |
| arm_3R | 20768998..20769243 | 67..312 | 100 | <- | Minus |
| arm_3R | 20770140..20770202 | 2..66 | 93 | | Minus |
