FMO13882.5prime Sequence
1055 bp (946 high quality bases) assembled on 2013-10-14
> FMO13882.5prime
TCAGTCGACATGACGTCGATTGTGGAGATGCCAAGGGCAAATTTAGAGGA
GGCCTTGCCACCATGGATGAAGATAGACTGGTCGGACGAGGTGCTCCACG
ACATTTACAGGGACTGGGGAACCTACTATTCCCGCCGCCGTCGGGAGAAC
TTCGCATTGCACTATCTAAACAAGGCACTCGCATTGGAGCCAACGGATCA
CATGACCCTCTACAAACGATGCCAGAGCAAGAGGAAGGCTGCCCAGATGC
TGGGTGCGCTGGATGACAGCCGGGCAGCTGCCAAGCTAGCACGCAGTAAG
GATGGCGAGGAAAAGGCCATAATCAATCTCGATATTTGTGATGTACTCTA
CGAACTAAACCAGTTCGAAAACAGCAAGGCTGAGATGCACAATAATATGC
GAGTGTTTATTGGTAATAAAAGAAAGAGCTTCGAGCAGCGCCAGTTGGTG
GTGGATGGTGTGATCAAAGATGTGACTGGTGAGGCCATGTCAGCATTCTT
TACCAAGAATTTGAAGACCGTCAGCATTGTTCACGATTTGATCAAGGAAA
GGGAAAGGGTCGATAATCGACCCTTGTGGAAGAGACTGAAGGAGCAGGGC
AAGTGCGATGTGCAGAGTATTCCAGAGGTTCCTGAGGAGATGCTCTCGCC
CATGGAGATTGCTCGCCGGAAGCGTGCCTTTAACATCTTCCACCAGAGTT
ACATCAACGACTCCTGGATCGATGTGCTCTTCATGAAGATGCTGTGCAAG
AATCCAAACCTTTTGCTACCCCAGTGCAAGGAGTCCTCATACTTCCTTCA
GCAGCTTTCTAGCAAGCATACGAGATTGTTCGCAAGTTTATGAAATGCTG
CAGTCCCGCCTCCCCACTTTACTGGTTCATTATCTGAAATACAGCAATAA
AGCCATGTCGATTAATACCGTGAGGCTTACCTGTTCGCGTACATATCAGA
CCATCGTAACATGACCATGCTCTGGAGGAGATTAGGGCACTCCGCAGCCA
GGAGTCAGCATTGGCGAATTCGTCGAGGAGCTATGGACCATATGTGATCC
TGAAC
FMO13882.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:52:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15128-RA | 2011 | CG15128-RA | 197..1257 | 10..1054 | 4760 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:52:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19686889..19687282 | 842..450 | 1920 | 99.7 | Minus |
| 2R | 25286936 | 2R | 19687609..19687882 | 283..10 | 1370 | 100 | Minus |
| 2R | 25286936 | 2R | 19687370..19687538 | 452..284 | 845 | 100 | Minus |
| 2R | 25286936 | 2R | 19686663..19686821 | 996..843 | 375 | 92.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:52:52 has no hits.
FMO13882.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:24:26 Download gff for
FMO13882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15128-RA | 188..1257 | 1..1055 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:51:21 Download gff for
FMO13882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15128-RA | 188..1257 | 1..1055 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:51:21 Download gff for
FMO13882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19686889..19687281 | 451..842 | 99 | <- | Minus |
| 2R | 19687372..19687538 | 284..450 | 100 | <- | Minus |
| 2R | 19687609..19687889 | 1..283 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:24:26 Download gff for
FMO13882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15574394..15574786 | 451..842 | 99 | <- | Minus |
| arm_2R | 15574877..15575043 | 284..450 | 100 | <- | Minus |
| arm_2R | 15575114..15575394 | 1..283 | 98 | | Minus |
