FMO13883.5prime Sequence
1004 bp (914 high quality bases) assembled on 2013-10-14
> FMO13883.5prime
TCAGTCGACATGAACAACAACAGCTTATTACGTTATCAAAACTCAAAACT
CATCGAGAGTGTTATGAACATACTAAATCCAGGCAAATTCAAGTGTATCG
TATTTGACCAACTGCGTCACACTTGGACATTTCTTTTGTTTATCTGCGAC
TTCCTGGCGAAGATTTACAGGACGCCTCGTATAACTGCCCACCAGGAGCA
GCTGGCCAACCATAATAATAACAACAACAATAATAACGATCTGATCATGG
AACAGGACATGCCAGAGGAGGAAGTGGGTCAGCCAGAGGAGGCTCTGCCG
CAGCAGGACAACGGTGAGGTTGTCGACCGTTTCAATGCCATTCAGGCTGC
CGTGGAGCTCATGGACGCAGCCAGCGATTTGGACGAGGAAGAGGAGGAAG
AAGACGACGACGTGGACGTGGATGTGGACTACGGCGATACAGATTCGGAG
TCAGAATTCGAAGAGATGTACTCCGACGAGTGGACCAGTTCCAGCGATGA
GCTGGACGAGGGTACAGAGCTATCTAAGAGTGTCTTGAATGTCTTCCTCT
CGTCGGATAAACAGCAATCTCAAATGGCCGGACAGATTCCCATGTACGCC
TTCCAGCCGTTGCGTCTCGTCAAGTGCCAGTACAGGGATAAACATATACC
CGGTGGATTCCCTCTGGCACGCAGTGGCCACCGGATCATTGCCTCCAATT
CGCATCTGTATTCCCTGGGTGGCTACAATCCGCGGAGCGCCATGTCTGCA
TCACGCCACGGCCGATGTCTTCTCTTCCAGGAGCTGTGGAGCTACAACTT
TGCCACGAGAACCTGGAAGGCTGGAGCTGATTGCGGGCAATGCCGCCAAT
ATGCCGTGAGCTGGCTCCAATGCATTGACATTCACAATAACGTGTTGATT
TCTCATGGCGGCACTGGATATCCAATTTGGAGTATCTGCTTCACGACTGT
TACGTTTACCGACCGACAGTGCCTGGCGCGACACCAGGGGTGATCGCCTC
AGTA
FMO13883.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:52:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slim-RC | 2510 | CG5186-RC | 474..1451 | 28..1000 | 4510 | 98.1 | Plus |
| slim-RA | 3081 | CG5186-RA | 474..1451 | 28..1000 | 4510 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:52:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18441438..18442313 | 28..900 | 4125 | 99.1 | Plus |
Blast to na_te.dros performed 2014-11-28 23:52:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 22..50 | 208..236 | 118 | 89.7 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7060..7088 | 208..236 | 118 | 89.7 | Plus |
| Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 2873..2928 | 213..266 | 112 | 71.4 | Plus |
| Stalker | 7256 | Stalker STALKER 7256bp | 2767..2822 | 213..266 | 112 | 71.4 | Plus |
FMO13883.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:24:27 Download gff for
FMO13883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slim-RA | 474..1454 | 28..1003 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:51:25 Download gff for
FMO13883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slim-RA | 474..1454 | 28..1003 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:51:25 Download gff for
FMO13883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18441438..18442313 | 28..900 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:24:27 Download gff for
FMO13883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14328943..14329818 | 28..900 | 99 | -> | Plus |
