FMO13884.5prime Sequence
1030 bp (944 high quality bases) assembled on 2013-10-14
> FMO13884.5prime
TCAGTCGACATGTTTTTAAGACGACTTTTAAACGACTACACCAAGGCAGT
TCGCCTGAAAACCCTTTGCAATCCCTGGAATCGCCACAAATCCTTCGCCG
CAGCGATGTCAGAGGCTCTAGATAAACTGGAGGTGGAGAAGGAAGCCAGG
AAAGAGGCCAAAGAACTGGAGGGCGAAGCCGTGAAGGACGCCAACCGCAT
CAAGAGAACACTTAAACGCAAGAAATGGGTCGATTGGAAGGAGCAGGACG
AGAAGGATGCCGCCAACGGCGTGAAGCGAGCGCCGTTCGATCCCGCCGAC
CGGATCAAGCGCAAGAAGAGCGCCATCCTGCTTAGCTACTGCGGTGCGAA
CTACTATGGTATGCAGCGCAATCCCGGCATGCAGACCATCGAGGAGGAGC
TCTTCAAAGCCATGCTAAAGCACAAGTGGATTACAGAGGACAGCTTTGAG
CAGATTCAGATTTCCTGTTTCCAAAGAGCGGCCAGGACCGACAAGGGCGT
CTCCGCCGCCCGCCAGGTGTGCTCCGTCAAGCTGCCTGAGGAGCTGGACC
TGGAGGCCTTCAATGCCGATCTGCCGCAACAGATCCGTCTGTTTGGCGTA
GAACGCGTGACTAAGGGCTTCAATGCCAAGGATCAATGCAATGCTCGGAC
CTACACCTACACACTGCCCACCGTGGCCTTTGCTCCGTTTGAGGAAAAGG
TCGACGACGTGCACGACACCTTCCGGATTTCACCAGAGCTGCTGCAGAAT
GTTAAAGAAACCCTGAAGCTCTACGAGGGCACGAAGAACTTCCACAACTT
CACCAGCAAGAAAAGCTTTCTGGATCCTTCGTCCAAGCGCTTCATCATGT
CCTTTACGAGCAGCGAGCCATTCCGGAGTCCCCAGACATCGAATTTGTCA
CACTTAAGTTACGGTCAGAGCTTATGCTGCACCAGATCGCAGATGGTGGG
TCTAGCATTGCATTGTAGAGAAACGACGCGTCACTTAAGCGTCACTGACG
AGAACGTCTGACCTGCCAATGCCTGGACTG
FMO13884.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4159-RB | 1466 | CG4159-RB | 76..1041 | 10..967 | 4600 | 99 | Plus |
| CG4159-RA | 1462 | CG4159-RA | 76..1037 | 10..967 | 4530 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20592008..20592495 | 535..48 | 2440 | 100 | Minus |
| 3R | 32079331 | 3R | 20591676..20591952 | 812..536 | 1370 | 99.6 | Minus |
| 3R | 32079331 | 3R | 20591462..20591611 | 956..813 | 455 | 94.7 | Minus |
| 3R | 32079331 | 3R | 20592557..20592596 | 49..10 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:53:01 has no hits.
FMO13884.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:24:28 Download gff for
FMO13884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4159-RB | 76..1043 | 10..970 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:51:30 Download gff for
FMO13884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4159-RB | 76..1043 | 10..970 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:51:30 Download gff for
FMO13884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20591676..20591952 | 536..812 | 99 | <- | Minus |
| 3R | 20591447..20591611 | 813..970 | 93 | <- | Minus |
| 3R | 20592008..20592493 | 50..535 | 100 | <- | Minus |
| 3R | 20592557..20592596 | 10..49 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:24:28 Download gff for
FMO13884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16417398..16417674 | 536..812 | 99 | <- | Minus |
| arm_3R | 16417169..16417333 | 813..970 | 93 | <- | Minus |
| arm_3R | 16417730..16418215 | 50..535 | 100 | <- | Minus |
| arm_3R | 16418279..16418318 | 10..49 | 100 | | Minus |
