FMO13886.5prime Sequence
429 bp (429 high quality bases) assembled on 2013-10-14
> FMO13886.5prime
TCAGTCGACATGCCGCCCTGGCGTGGTGAACTTCCAATGGCCGCGTTCCT
CGCCAACTCCAAGCAGTACTTGCGACCATTGAGCAGCGCCATCATCAGCC
AGAGCCAGACTTTGGCCGCTCAGAACACAACCCCCGTTGCATTGCTGCCA
CAGATCAGGTCATTCCAGACCTCGCCAGTCACGCGTGACATTGACTCGGC
CGCCAAATTCATTGGTGCTGGTGCCGCAACAGTCGGTGTCGCTGGATCCG
GTGCTGGTATCGGAACAGTATTCGGTTCCCTCATCATCGGCTACGCCAGG
AACCCATCGCTGAAACAGCAGCTGTTCTCCTACGCCATTCTGGGCTTCGC
CCTGTCCGAGGCCATGGGTCTGTTCTGTTTGATGATGGCCTTCCTGCTGC
TGTTCGCCTTCGCAAGCTTTCTAGACCAT
FMO13886.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1746-RF | 1350 | CG1746-RF | 77..478 | 10..411 | 2010 | 100 | Plus |
| CG1746-RG | 722 | CG1746-RG | 106..475 | 42..411 | 1835 | 99.7 | Plus |
| CG1746-RE | 1730 | CG1746-RE | 489..858 | 42..411 | 1835 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31217738..31217945 | 252..45 | 1040 | 100 | Minus |
| 3R | 32079331 | 3R | 31217017..31217178 | 411..250 | 810 | 100 | Minus |
| 3R | 32079331 | 3R | 31218793..31218828 | 45..10 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:53:49 has no hits.
FMO13886.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:24:48 Download gff for
FMO13886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1746-RF | 69..483 | 1..417 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:51:55 Download gff for
FMO13886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1746-RF | 69..483 | 1..417 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:51:55 Download gff for
FMO13886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31217012..31217177 | 251..416 | 98 | <- | Minus |
| 3R | 31217740..31217944 | 46..250 | 100 | <- | Minus |
| 3R | 31218793..31218835 | 1..45 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:24:48 Download gff for
FMO13886.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27042734..27042899 | 251..416 | 98 | <- | Minus |
| arm_3R | 27043462..27043666 | 46..250 | 100 | <- | Minus |
| arm_3R | 27044515..27044557 | 1..45 | 91 | | Minus |
