Clone FMO13887 Report

Search the DGRC for FMO13887

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:138
Well:87
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG15657-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO13887.5prime Sequence

366 bp (366 high quality bases) assembled on 2013-10-14

> FMO13887.5prime
TCAGTCGACATGCTGATCTACTATATTTATAGTGTGCTCGAAGCCATTTC
GTATGCGATCTACACAACAGTGGCCACCATTTCGAGCATTGAACAGGCCC
TAATCAACCTGATGATGTCCACATTTCTGTTTGTGCTTGGGATAGCGTGT
CACCCGGTAATGGTGATTCCCCTGATGCTGGGAGGCTACTATATTCTACG
CAACTGTTTGAATCGTCGGACCAAGGCGCCAAGGCTGCAGAGTTCCGTGG
ATGGCGATGCCGGACTGATCACGGCAGGACCACGTAAAGTGCCACGTTTT
CCCTCTCATCGCAGCCTCGCTCTCGGCGTTGACGCTCCCAAGGACAACGC
AAGCTTTCTAGACCAT

FMO13887.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG15657-RB 475 CG15657-RB 40..378 10..348 1680 99.7 Plus
CG15657-RA 617 CG15657-RA 40..378 10..348 1680 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21147717..21147970 348..95 1270 100 Minus
2R 25286936 2R 21148030..21148114 94..10 410 98.8 Minus
Blast to na_te.dros performed on 2014-11-28 23:53:52 has no hits.

FMO13887.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:24:51 Download gff for FMO13887.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15657-RA 40..381 10..352 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:51:57 Download gff for FMO13887.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15657-RA 40..381 10..352 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:51:57 Download gff for FMO13887.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21147713..21147970 95..352 99 <- Minus
2R 21148030..21148114 10..94 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:24:51 Download gff for FMO13887.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17035218..17035475 95..352 99 <- Minus
arm_2R 17035535..17035619 10..94 98   Minus