FMO13888.5prime Sequence
564 bp (564 high quality bases) assembled on 2013-10-14
> FMO13888.5prime
TCAGTCGACATGTCGGAGCAACCGTCCATCTGTCACAAGTGCAATGAGGT
CATCCAACTGCGCATCATTACCGCTCTGGGCAAGACCTGGCATCCGGAGC
ACTTCGTCTGCAAGGACTGCCAATGTCCCATCACCGAGGCCTCCTTCAAC
ATCAATGATGGTCAGCCCGTCTGCTCCGCCTGCTTCGTGTCGAACTACTC
GGGCATCTGTCACGGCTGCAAACGTCCCATTCTGGAGCGCACCATCAAGG
CCATGGGTGAGACGTGGCATGAGGAATGTTTCTTGTGCCGCGGACCCTGC
ATGCAGCAATTGGCGGGCTCCTCCTTCTACGAGCACGATGGGCTTCCCTA
CTGCCGGACAGACTTCGAGCATATGTTCGCCGCCCGCTGCGGCAATTGCA
AAGCTCCCATTACGGAGAACGCGATCGTGGCCCTCGACGCCAAGTGGCAT
CGGGAGTGCTTCAAGTGCAAGAAATGCAAAACACCCATCACGGCCAGTTC
CTTTGTCGTGGAGGATAACCAACCGTTGTGCAAGGCCTGCTCCGATGCAA
GCTTTCTAGACCAT
FMO13888.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34325-RB | 1252 | CG34325-RB | 273..809 | 10..546 | 2685 | 100 | Plus |
| CG34325-RA | 1245 | CG34325-RA | 266..802 | 10..546 | 2685 | 100 | Plus |
| CG34325-RC | 1020 | CG34325-RC | 268..577 | 237..546 | 1550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16715056..16715291 | 471..236 | 1180 | 100 | Minus |
| X | 23542271 | X | 16716438..16716663 | 237..12 | 1130 | 100 | Minus |
| X | 23542271 | X | 16714892..16714968 | 546..470 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:53:55 has no hits.
FMO13888.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:24:52 Download gff for
FMO13888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34325-RA | 258..807 | 2..551 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:51:58 Download gff for
FMO13888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34325-RA | 258..807 | 2..551 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:51:58 Download gff for
FMO13888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16714887..16714966 | 472..551 | 97 | <- | Minus |
| X | 16715056..16715289 | 238..471 | 100 | <- | Minus |
| X | 16716438..16716667 | 5..237 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:24:52 Download gff for
FMO13888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16608920..16608999 | 472..551 | 97 | <- | Minus |
| arm_X | 16609089..16609322 | 238..471 | 100 | <- | Minus |
| arm_X | 16610471..16610700 | 5..237 | 98 | | Minus |
