FMO13889.5prime Sequence
1051 bp (804 high quality bases) assembled on 2013-10-14
> FMO13889.5prime
TCAGTCGACATGTTCTCCAGCTTCTTTGAAACTGCCCGGAACTCGCCATT
CCGCACCCCCATGTCGATGGCAAGATGCGATGCCGCCGCCCCAGTGGTGG
AACCCCAGCCGGTTGAGGGTCGCCAGATCGCCGCCGCCGCTACCCCGGTG
GCCAACCAGCAGGATTCGTGCGAATTCGGCAGCACCAAGTACTTCGCTCT
GTGCGGAATTGGTGGCATTCTCAGCTGCGGCACCACCCACACCTTCGTGG
TCCCACTGGATCTGGTGAAGTGCCGTCTGCAGGTCGACCAGGCCAAGTAC
AAGAATCTGGTGCACGGATTCAAGGTCACCGTGGCGGAGGAGGGCGCCCG
CGGACTGGCTAAGGGCTGGTTCCCCACTCTGCTCGGCTACTCGGCACAGG
GTCTGTGCAAGTTCGGTCTGTACGAGTTGTTCAAGGTGAAGTACGCCGAA
ATCATTGGCGAGGAGAACGCCTACCTGTACCGCACCTCCTTGTATCTGGC
TGCTTCCGCTTCGGCCGAGTTCTTCACCGATATCGCTCTGGCGCCGTTCG
AGGCCGCCAAGGTGAAGATCCAGACTATTCCCGGATACGCCAACAACTTC
CGCGAGGCAGTGCCCAAGATGCTAAAGGAGGAGGGCGTCAATGCCTTCTA
CAAGGGTCTGGTTCCCCTGTGGATGCGACAGATCCCATACACCATGATGA
AGTTCGCTTGCTTCGAGCGCACCGTGGAGCTGCTCTACAAGTATGTGGTG
CCCAAGCCTCGTGCCGACTGCACCAAGGGCGAGCAGCTAGCTAGAAACTA
CCAAAACGGAAATGAGCGAAAATGCATATTCTGCCATTCCACACACACAC
CAACAACACCAACACACGCACACCACAAGCTAACACACACACATTCGCGG
AATTGACAAGGACTTCAAGATAAGAAGAACTTAAAGAAGATATTTCCCCA
AGCGCCAAAACGAACACACACACCAATTGCAAAAACCAAAAAAGCACTCT
ACCGTTTGTACAAAATCCGGTCCCGCACCCTATGATCTAATTTCTTAATT
A
FMO13889.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mpcp-RC | 1771 | CG4994-RC | 152..930 | 10..788 | 3880 | 99.9 | Plus |
| Mpcp-RB | 1757 | CG4994-RB | 138..916 | 10..788 | 3880 | 99.9 | Plus |
| Mpcp-RA | 1700 | CG4994-RA | 81..859 | 10..788 | 3880 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14538032..14538422 | 10..400 | 1955 | 100 | Plus |
| 3L | 28110227 | 3L | 14538726..14539072 | 397..743 | 1720 | 99.7 | Plus |
| 2R | 25286936 | 2R | 20279543..20280160 | 786..169 | 1185 | 79.4 | Minus |
| X | 23542271 | X | 5904168..5904339 | 803..973 | 515 | 93.1 | Plus |
| 3L | 28110227 | 3L | 14539553..14539600 | 741..788 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:53:58 has no hits.
FMO13889.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:24:54 Download gff for
FMO13889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mpcp-RA | 70..859 | 1..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:52:00 Download gff for
FMO13889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mpcp-RA | 70..859 | 1..788 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:52:00 Download gff for
FMO13889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14538021..14538421 | 1..399 | 98 | -> | Plus |
| 3L | 14538729..14539069 | 400..740 | 99 | -> | Plus |
| 3L | 14539553..14539600 | 741..788 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:24:54 Download gff for
FMO13889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14531121..14531521 | 1..399 | 98 | -> | Plus |
| arm_3L | 14531829..14532169 | 400..740 | 99 | -> | Plus |
| arm_3L | 14532653..14532700 | 741..788 | 100 | == | Plus |
