FMO13895.5prime Sequence
870 bp (870 high quality bases) assembled on 2013-10-14
> FMO13895.5prime
TCAGTCGACATGTCCGCTCCTGTAGAGGGTGTTCCCTATGAGGAGATCCA
GACAAAAGAGCTTATAGGCACCGGATTCTATGGCAGCGTATACAGGGCGG
TCTGGAGAAATCGTGAGATCGCGCTGAAGAGAATTCGCGAGGGATGTGAG
GATAAAAAGATTGAAAGAGAGATCTACCAGCTGACAAAGGCCAGCCATGT
CAACATAGTTGAGCTCTACGGCACATCGAGGCACGAGGGATGCGCCCTGC
TGTTGATGGAATTCGTAGACGGTGGATCTCTGTCCAGTTTTCTGCACGCG
AAAAGCAAGCCAAGTTATTCGCATGCCCACGCCTTCAACTGGGCGCATCA
GATCGCTCAGGGCATAGCCTATCTGCATGGCATGCAGCCGAAAGCAGTAA
TTCATCGCGATATAAAGCCACTCAATACACTGCTATGCGAGAAGGGACTC
AAACTGAAGATTTGCGATTTCGGAACTGTTGTGGACCTATCCCAATCGAT
ATCGTGCAATGCGGGCACCTGCAGATACAAAGCGCCCGAGGTTCTACAAG
GAAATAAACCCGATGAAAAGTGCGATGTGTATAGTTGGGCTATTACCTTT
TGGGAAATATTGTCGCGCAAGGAGCCATTTGAGCAATATAATACGCTTTT
TGAACTGTACATGGCTATTAATGAAGGCGAGAGACCGGATTTAAGTTGCA
TTATGTCTGGCTGCCCCGCGGATATAGTTGCTCTTTTGTACGCTTCTTGG
GATCCGGATATCAGCAAAAGATTTTCTATGGAACTGATTTCCCAAAGCAT
GGGTAGAATCCTAAGTGAGGCGGGATCCATTCCACCACTGGATTTTTACT
CAGCAAGCTTTCTAGACCAT
FMO13895.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Takl2-RB | 928 | CG4803-RB | 27..869 | 10..852 | 4215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22733407..22733709 | 361..59 | 1515 | 100 | Minus |
| 3R | 32079331 | 3R | 22732852..22733035 | 542..359 | 920 | 100 | Minus |
| 3R | 32079331 | 3R | 22732415..22732592 | 852..675 | 890 | 100 | Minus |
| 3R | 32079331 | 3R | 22732644..22732789 | 684..539 | 715 | 99.3 | Minus |
| 3R | 32079331 | 3R | 22733775..22733825 | 60..10 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:53:39 has no hits.
FMO13895.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-10-14 12:24:43 Download gff for
FMO13895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Takl2-RB | 24..882 | 7..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:51:50 Download gff for
FMO13895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Takl2-RB | 24..882 | 7..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:51:50 Download gff for
FMO13895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22732854..22733033 | 361..540 | 100 | <- | Minus |
| 3R | 22733408..22733707 | 61..360 | 100 | <- | Minus |
| 3R | 22733775..22733828 | 7..60 | 98 | | Minus |
| 3R | 22732402..22732590 | 677..863 | 97 | <- | Minus |
| 3R | 22732652..22732787 | 541..676 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-10-14 12:24:43 Download gff for
FMO13895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18558576..18558755 | 361..540 | 100 | <- | Minus |
| arm_3R | 18559130..18559429 | 61..360 | 100 | <- | Minus |
| arm_3R | 18559497..18559550 | 7..60 | 98 | | Minus |
| arm_3R | 18558124..18558312 | 677..863 | 97 | <- | Minus |
| arm_3R | 18558374..18558509 | 541..676 | 100 | <- | Minus |
