FMO13920.5prime Sequence
783 bp (783 high quality bases) assembled on 2014-01-10
> FMO13920.5prime
TCAGTCGACATGGCTCAGCGATACGATCGCGCGGTGACCATTTACTCACC
CGACGGTCACCTGCTGCAGGTGGAGTACGCCCAGGAGGCCGTCCGAAGGG
GTTCCACTGTGATGGGTCTGCGCACCAACAACGCCATTGTAATCGGCGTG
GAGAAGCGCTCCGTGGGCGACTTGCAGGAGGAGCGCATGGTGCGCAAGAT
TTGCATGCTCGACGACCACGTGGTGATGACTTTTTCGGGTCTCACCGCGG
ACGCACGGATCCTGGTAAGCCGCGCCCAAATGGAGGCCCAGAGCCATCGT
CTGAATTTCGAGAAGCCCACGACCGTGGAGTACATAACCCGATACATAGC
CCAGCTGAAACAGAACTACACGCAGAGCAATGGGAGGCGTCCATTTGGAT
TGTCCTGTCTGGTTGGGGGCTTCGACGAGGATGGCACTCCACACCTGTTC
CAAACGGATCCCTCGGGCATCTTCTACGAGTGGAGGGCCAACACCACCGG
CCGCTCAAGCCAGCCGGTCCGCGATTACATGGAGAAGCACGCGGACGAGA
TTCTGACCATCGCCGACGAGGCAGCGGCCATCAAGCACATAGTCCGCACC
CTGGTCAGCGTGTCCTCGCTCAACCACACCCAAATGGAGGTGGCTGTGCT
CAAGTACCGCCAGCCACTGCGTATGATTGATCACCAGGTCCTGGCCGATC
TGGAGCGAACCGTTCGCAGGGAAATTGAAGACGAGGCCGAGGCCAGTCGG
CGGCCCCGTGCTCCCGCAAGCTTTCTAGACCAT
FMO13920.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha4T2-RB | 1254 | CG4569-RB | 91..846 | 10..765 | 3765 | 99.9 | Plus |
| Prosalpha4T2-RA | 1169 | CG4569-RA | 91..846 | 10..765 | 3765 | 99.9 | Plus |
| Prosalpha4-RA | 1176 | CG3422-RA | 161..639 | 22..500 | 865 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24501188..24501612 | 765..341 | 2110 | 99.8 | Minus |
| 2R | 25286936 | 2R | 24501792..24502022 | 341..111 | 1155 | 100 | Minus |
| 2R | 25286936 | 2R | 24502086..24502187 | 111..10 | 510 | 100 | Minus |
| 3R | 32079331 | 3R | 20748547..20748991 | 481..37 | 425 | 73 | Minus |
| X | 23542271 | X | 16276630..16276824 | 145..339 | 390 | 80 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:00:51 has no hits.
FMO13920.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:20:08 Download gff for
FMO13920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha4T2-RA | 88..852 | 5..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:56:01 Download gff for
FMO13920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha4T2-RA | 88..852 | 5..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:56:01 Download gff for
FMO13920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24501181..24501611 | 342..774 | 98 | <- | Minus |
| 2R | 24501792..24502021 | 112..341 | 100 | <- | Minus |
| 2R | 24502086..24502190 | 5..111 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:20:08 Download gff for
FMO13920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20388704..20389134 | 342..774 | 98 | <- | Minus |
| arm_2R | 20389315..20389544 | 112..341 | 100 | <- | Minus |
| arm_2R | 20389609..20389713 | 5..111 | 98 | | Minus |
