FMO13922.5prime Sequence
933 bp (933 high quality bases) assembled on 2014-01-10
> FMO13922.5prime
TCAGTCGACATGCGCTCCCTTTGGCTGCTGCTCGGCTTGGGCCTGCTGGC
TGTGAGCCACGTCCAGGCCTCTACGGAGTTTTCCGAAGATCTGCTGGATG
AGGACCTCGACCTGTCCGACATCGATGAGAACGAAGAGGAGTTCCTGCGC
CTGCTGGAGGAGAAGAACAAGATCAAGGATATTGAGCGCGAGAATGAGAT
TGCCACCAAGCTGGCCGAAGTGCAGCACAATCTACTCAATCCCGTTGTCG
AGGTGGATCTGTGCGAAACGATGAGCTGCGGAGCCGGTCGCATCTGCCAG
ATGCACGACGAGAAGCCCAAATGCGTGTGCATTCCGGAGTGCCCGGAGGA
GGTGGACACTCGCCGCCTGGTCTGCACTAATACCAACGAGACCTGGCCGT
CGGACTGCTCTGTGTATCAGCAGCGCTGCTGGTGCGACAGCGGCGAGCCC
GGCTGCACCAATCCGGACAACGCGCACATGCACATCGACTACTACGGCGC
TTGCCACGAGCCCAGGAGCTGCGAGGGCGAGGACCTGAAGGACTTCCCCA
GGCGCATGCGCGACTGGCTGTTCAACGTGATGCGCGACCTGGCCGAGCGC
GACGAGCTGACCGAGCACTACATGCAGATGGAGCTGGAGGCGGAGACCAA
CAACTCGCGTCGCTGGTCGAACGCCGCCGTGTGGAAGTGGTGCGACCTGA
ACGGCGATACCGATCGCTCCGTCTCGCGCCACGAGCTCTTCCCCATCCGT
GCTCCGCTGGTCAGTCTCGAGCACTGCATCGCACCCTTCCTCGAGTCCTG
CGACTCCACAAGACCATCGCATCACCCTGATGGAGTGGGCGCTTGCCTGA
GCTGGATCCCGAGACTTCAAGGAGCGTGCGACGACGTCCAGCGGGCTCAG
CCCCTTCTTCTGGGTGCAAGCTTTCTAAACATT
FMO13922.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BM-40-SPARC-RB | 1131 | CG6378-RB | 72..988 | 5..915 | 4330 | 98.6 | Plus |
| BM-40-SPARC-RA | 1143 | CG6378-RA | 84..1000 | 5..915 | 4330 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26869381..26870132 | 915..170 | 3375 | 98.1 | Minus |
| 3R | 32079331 | 3R | 26870193..26870359 | 171..5 | 820 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:00:29 has no hits.
FMO13922.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:19:55 Download gff for
FMO13922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BM-40-SPARC-RA | 80..1000 | 1..915 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:55:47 Download gff for
FMO13922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BM-40-SPARC-RA | 80..1000 | 1..915 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:55:47 Download gff for
FMO13922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26869381..26870130 | 172..915 | 98 | <- | Minus |
| 3R | 26870193..26870362 | 1..171 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:19:55 Download gff for
FMO13922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22695103..22695852 | 172..915 | 98 | <- | Minus |
| arm_3R | 22695915..22696084 | 1..171 | 98 | | Minus |
