FMO13928.5prime Sequence
839 bp (839 high quality bases) assembled on 2014-01-10
> FMO13928.5prime
TCAGTCGACATGAATTTCGCATCTTGTCTTGCTGTGTTATCATGGATGCT
GGCTAATCAGGGATCGGCACAGCTTCTTGACCAGAACTGTGCCGAAGTTT
CACGTCTTTCTAATGATATAATATTTAGTAGACCGTGGATGGCACTGGTC
TTATTGCCCAATAAAACCTGCAGTGGCGCCCTGATTCACAAATACTTTGT
GATAACATCAGCAAGCTGTGTTTTCAATCAAGAGAGAGCCATCGTCCGCT
TGGGGCAGTTGAGCATTAAACAAGAGCATATTGTTAGTTATAGCAGTGAT
GATTACCATGTGCAAAGTGCCTACATTCATAGGTTCTATGAGAAAAGCAA
TTTCGAGCATGACATAGCTTTGCTGGAACTTCAGAACGATGTGCTCTACA
AGGCCCACATACGTCCAATTTGCCTTTGGTTAGACAAATCTGATATCGAC
ACACAAATGTTTAAAAGATATGAAACATTCCGCTGGGGCATAGATGAGAA
GTACATATTGCCTGCGGCCAAGACAAGCAAAATAAAACACATCAGCCAAG
TCAAGTGCGAAAATGCCTTCAAATTGTATCCGCAGAATTCGCATATCTGT
GCTGGCTATAAGAACAAAAGCAAGTGCGTGGAAACAGGAAGTCCCTTGTT
TAAAAAGATACGCTATTACACAAAAATTCGTTACACTCTATTCGGAATTC
AGAGTTATGGCGAATCGAGGACGTGTTTATATACCGATGTGACGAAATAC
ATTGACTGGATTATGGGAGTCATTCAAAATGTTAATGTGATAGTGTCGAA
TGGGGAAAATAGCTACGCTGCAAAGCTTTTCTAGACCAT
FMO13928.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34436-RA | 853 | CG34436-RA | 7..816 | 10..819 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28282932..28283511 | 240..819 | 2900 | 100 | Plus |
| 3R | 32079331 | 3R | 28282586..28282769 | 10..193 | 920 | 100 | Plus |
| 3R | 32079331 | 3R | 28282830..28282875 | 194..239 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:01:12 has no hits.
FMO13928.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:20:23 Download gff for
FMO13928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34436-RA | 1..823 | 7..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:56:16 Download gff for
FMO13928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34436-RA | 1..823 | 7..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:56:16 Download gff for
FMO13928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28282574..28282769 | 1..193 | 97 | -> | Plus |
| 3R | 28282830..28282875 | 194..239 | 100 | -> | Plus |
| 3R | 28282932..28283515 | 240..820 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:20:23 Download gff for
FMO13928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24108296..24108491 | 1..193 | 97 | -> | Plus |
| arm_3R | 24108552..24108597 | 194..239 | 100 | -> | Plus |
| arm_3R | 24108654..24109237 | 240..820 | 99 | -> | Plus |
