FMO13937.5prime Sequence
507 bp (507 high quality bases) assembled on 2014-01-10
> FMO13937.5prime
TCAGTCGACATGAGTTCTATCGAGTGGATCGCTGATATGCTTTTCTACGC
TATGCGCACCTACCTCAAGATGACCGCACCCAGTTGCGATGCACACTTCC
TTATCAATGCCCTTGGAAAGATTGAACATCTTATACATTTCATTGAATTT
TCCATTATGATAATACGGCGGCCAAGAAATCTCATGGTTTTGACTAATAG
CCGAGAGAGCCGCCTTCAACTCCGCAATTGCCTTTCAATGTTAAGGACTT
GGGCACAAGTGATATACGCATTGCTATCCGTGCTTGCTTTAATCCATATC
AAAACGATTTACATTAGTATCGCGCTGTTGATTTCCGGCATCGTCTTGTT
CACTGATATGATCTTCATGGCAATAAATGGCGTACATGGCAGGAGAACGC
TGCGACCCGCGCAGATTCTATGGATTTCGTTGTGTTGTTGCACTTGGGTG
CCATGGATCCTGGACGAAATGATCAACTATTTGTATAAAGCAAGCTTTCT
AGACCAT
FMO13937.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43076-RA | 771 | CG43076-RA | 100..579 | 10..489 | 2400 | 100 | Plus |
| CG42766-RA | 626 | CG42766-RA | 126..403 | 20..297 | 370 | 75.5 | Plus |
| CG42766-RB | 732 | CG42766-RB | 126..388 | 20..282 | 325 | 74.9 | Plus |
| CG42766-RA | 626 | CG42766-RA | 431..521 | 399..489 | 185 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15222849..15223056 | 489..282 | 1040 | 100 | Minus |
| X | 23542271 | X | 15223149..15223312 | 282..119 | 820 | 100 | Minus |
| X | 23542271 | X | 15223373..15223483 | 120..10 | 555 | 100 | Minus |
| X | 23542271 | X | 15977465..15977555 | 399..489 | 185 | 80.2 | Plus |
| X | 23542271 | X | 15977179..15977316 | 145..282 | 180 | 75.4 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:01:35 has no hits.
FMO13937.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:20:37 Download gff for
FMO13937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43076-RA | 6..495 | 1..489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:56:33 Download gff for
FMO13937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43076-RA | 90..579 | 1..489 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:56:33 Download gff for
FMO13937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15222849..15223055 | 283..489 | 100 | <- | Minus |
| X | 15223149..15223310 | 121..282 | 100 | <- | Minus |
| X | 15223373..15223493 | 1..120 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:20:37 Download gff for
FMO13937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15116882..15117088 | 283..489 | 100 | <- | Minus |
| arm_X | 15117182..15117343 | 121..282 | 100 | <- | Minus |
| arm_X | 15117406..15117526 | 1..120 | 96 | | Minus |
