FMO13938.5prime Sequence
225 bp (225 high quality bases) assembled on 2014-01-10
> FMO13938.5prime
TCAGTCGACATGTTGATAGCCCGACTGGCGTTTTTAGTCTCTATTCTGGG
CATTGTGGTTGGGTTCCAGAAACTGGACTCCACTTCCAGTCCCACGACTA
CCAGCACTATGAGGTCTGCCCCTTATTGTCAGCCAAGTGGAGGATATTGT
CGGATGCATATGGATTGCTGTTCGCGAATGTGCATTCAAGTGTCAGCAGA
GTGTCGCGCAAGCTTTCTAGACCAT
FMO13938.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42869-RB | 283 | CG42869-RB | 26..223 | 10..207 | 990 | 100 | Plus |
| CG43618-RA | 225 | CG43618-RA | 17..177 | 38..207 | 585 | 90 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21736687..21736824 | 147..10 | 690 | 100 | Minus |
| 3R | 32079331 | 3R | 8049209..8049283 | 73..147 | 315 | 94.7 | Plus |
| 3R | 32079331 | 3R | 21736573..21736636 | 207..144 | 305 | 98.4 | Minus |
| 3R | 32079331 | 3R | 8049345..8049408 | 144..207 | 260 | 93.8 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:01:38 has no hits.
FMO13938.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:20:38 Download gff for
FMO13938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42869-RB | 16..223 | 2..207 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:56:35 Download gff for
FMO13938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42869-RB | 16..223 | 2..207 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:56:35 Download gff for
FMO13938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21736573..21736632 | 148..207 | 100 | <- | Minus |
| 3R | 21736687..21736831 | 2..147 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:20:38 Download gff for
FMO13938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17562295..17562354 | 148..207 | 100 | <- | Minus |
| arm_3R | 17562409..17562553 | 2..147 | 97 | | Minus |
