FMO13939.5prime Sequence
786 bp (786 high quality bases) assembled on 2014-01-10
> FMO13939.5prime
TCAGTCGACATGAAGCTTCTGTGCAGTGTGCTAATCCTCGCCAGCGTTCT
GGCGGCCAACGCCAAGCCCAATGTTCAGCTGCAGCTGCAGAGTGCCCTCG
ACCAGTATTTGGTGCATGCCCGCAATTTGGATACCACCGTTTCCGCTGAC
GTGACCACCCAGTGCTTCAACCTCTATCTGCCCATGCTGAACGAAGTGGC
TGCCACCTTCTCCACTTCCTATCAGGCCTGCATCAGCACCGCCAACGCGG
AGACCGCCAATCTGACCGCCGAGGCCGACAAGCAGCAGAAGATCTACCAG
GCGGAGGTCACCAGCCTATGCAGCGCCTTCACCGCCTGCAACAGCGACAA
CGATACCACCAACTTCTTCAAGTGCTACGCCAATGCGGCCGAGAGTGATG
TATCTGTGATCTATGGCATCGCCACCAATGCCGCCAGTTCGGCCAACTCC
CTGAGCACAGGCATCCAGGCCATCCAGGACACCGAGTACCAGTGCACCAA
CACCACGGAGAGCAACTACGTCCGGGATACCGCTGCCACCTACGATCTGT
TGGACAGCTGCCTGAAGTACGGAGTGCCCACCACCTCCACCGCCGCCCCC
TCCTCCACCAGCCCCGTTGATAGCTCGAGCGGGGCTCCTGTCACTGATGG
CACCACTGTTGTGGCATCGTCCACCGCCGCTGCTGACACCACTGTGGCTG
TGACCACCGCTGCACCCGGAACCGCTGCTCCGGCGACCACCGCCACTTCC
GGCACTTCGGCCTCTTCTGCAAGCTTTCTAGACCAT
FMO13939.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5767-RA | 854 | CG5767-RA | 41..801 | 8..768 | 3790 | 99.9 | Plus |
| CG5770-RA | 910 | CG5770-RA | 22..596 | 4..584 | 1325 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18046439..18046820 | 768..387 | 1910 | 100 | Minus |
| 2R | 25286936 | 2R | 18047000..18047327 | 388..61 | 1625 | 99.7 | Minus |
| 2R | 25286936 | 2R | 18044621..18044919 | 386..88 | 655 | 81.3 | Minus |
| 2R | 25286936 | 2R | 18044360..18044548 | 584..396 | 540 | 85.7 | Minus |
| 2R | 25286936 | 2R | 18047391..18047444 | 61..8 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:01:41 has no hits.
FMO13939.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:20:40 Download gff for
FMO13939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5767-RA | 34..805 | 1..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:56:37 Download gff for
FMO13939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5767-RA | 34..805 | 1..773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:56:37 Download gff for
FMO13939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18046435..18046819 | 388..773 | 99 | <- | Minus |
| 2R | 18047001..18047327 | 61..387 | 99 | <- | Minus |
| 2R | 18047392..18047449 | 1..60 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:20:40 Download gff for
FMO13939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13934506..13934832 | 61..387 | 99 | <- | Minus |
| arm_2R | 13933940..13934324 | 388..773 | 99 | <- | Minus |
| arm_2R | 13934897..13934954 | 1..60 | 93 | | Minus |
