FMO13940.5prime Sequence
393 bp (393 high quality bases) assembled on 2014-01-10
> FMO13940.5prime
TCAGTCGACATGAGCAGCACATGGATGGGCAGAGCTCCAGAACCGGCCGA
CACGGAAATGGTGACCGTAACCACGCAGCCAAACTATGGGGTGGTGGTGA
CCCAGATACCCGTCTACACCCTGAACGGAGTGGGGCCGGGCGCACATCCA
CTGGCTGTGGGCTGCAAGCCGATGAGGGTGAGGTGTCCGTCCTGCAGGGG
CGAGGTCACCACCAGTCTGGCCACGTCCCCCACCCGCAAGACCCACATGT
GCGCTCTGACCTTGTATATCTGCTGCTGCTGGCCCTTCATCTGCCTTCCC
TACTTCATCAACTACTGCAAGAGTGTCCAGCACTACTGTCCCAACTGTGG
ATGCCACATTGGGAGCTATAGCATTGCAAGCTTTCTAGACCAT
FMO13940.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42565-RB | 2577 | CG42565-RB | 1163..1530 | 8..375 | 1840 | 100 | Plus |
| CG13511-RB | 2577 | CG13511-RB | 1163..1530 | 8..375 | 1840 | 100 | Plus |
| CG13511-RA | 496 | CG13511-RA | 20..387 | 8..375 | 1840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22659710..22659977 | 8..275 | 1340 | 100 | Plus |
| 2R | 25286936 | 2R | 22660035..22660135 | 275..375 | 505 | 100 | Plus |
Blast to na_te.dros performed 2014-11-29 00:01:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 642..689 | 270..317 | 114 | 70.8 | Plus |
| Fw3 | 3132 | Fw3 FW3 3132bp | 578..615 | 53..91 | 107 | 76.9 | Plus |
FMO13940.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:20:41 Download gff for
FMO13940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13511-RA | 19..386 | 8..375 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:56:38 Download gff for
FMO13940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13511-RA | 20..387 | 8..375 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:56:38 Download gff for
FMO13940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22659710..22659977 | 8..275 | 100 | -> | Plus |
| 2R | 22660036..22660135 | 276..375 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:20:41 Download gff for
FMO13940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18547215..18547482 | 8..275 | 100 | -> | Plus |
| arm_2R | 18547541..18547640 | 276..375 | 100 | | Plus |
