FMO13942.5prime Sequence
378 bp (378 high quality bases) assembled on 2014-01-10
> FMO13942.5prime
TCAGTCGACATGAACGCACCACCTACCTTTGAGTCATTTCTGCTCTATGA
AGGCGAGAAAAAAATCATCAAGGAACTGGACACCAAAGTGACCAATGCGG
CTATATTCACCATAAACAAAGAGGATCACACGCTGGGCAACATGATCCGC
AACCAACTGCTGAAGGATCCCAATGTTCTGTTTGCCGGCTACAAGGTTCC
GCATCCTCTGGAGCACAAGTTCGTCATCCGCATCCAGACTACGGCCGATT
ATTCTCCGCAGGAAGCATTCATGAACGCCATAACCGATCTTCTAGCAGAA
TTATCTCTCTTCGAAGAGCGTTTCAAAGACGCCATCAAGGAGAAGAAGGA
GGGCGGCGATGCAAGCTTTCTAGACCAT
FMO13942.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpb11-RA | 516 | CG6840-RA | 103..453 | 10..360 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17409855..17410034 | 328..149 | 885 | 99.4 | Minus |
| 2L | 23513712 | 2L | 17410088..17410177 | 152..63 | 450 | 100 | Minus |
| 2L | 23513712 | 2L | 17410252..17410304 | 62..10 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:01:50 has no hits.
FMO13942.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:20:43 Download gff for
FMO13942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb11-RA | 95..456 | 1..364 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:56:40 Download gff for
FMO13942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb11-RA | 95..456 | 1..364 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:56:40 Download gff for
FMO13942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17409758..17409793 | 328..364 | 94 | <- | Minus |
| 2L | 17409856..17410030 | 153..327 | 100 | <- | Minus |
| 2L | 17410088..17410177 | 63..152 | 100 | <- | Minus |
| 2L | 17410252..17410311 | 1..62 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:20:43 Download gff for
FMO13942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17410252..17410311 | 1..62 | 93 | | Minus |
| arm_2L | 17409758..17409793 | 328..364 | 94 | <- | Minus |
| arm_2L | 17409856..17410030 | 153..327 | 100 | <- | Minus |
| arm_2L | 17410088..17410177 | 63..152 | 100 | <- | Minus |
