FMO13944.5prime Sequence
841 bp (841 high quality bases) assembled on 2014-01-10
> FMO13944.5prime
TCAGTCGACATGCTGCACTTAAGGCTATTCGATAGCTCACTCTACTACAC
CCTGGCCTCCGCCTCCGAATCCTCGGGGCTGGCGTCCTCCACCTCCACGG
AAAGGTCGTTCAATGGCACCCAGGGGGCGGGGGGCGTGGCCGCTGGCGGC
GAGTCCCTAACGCCAACCGACGTGGCTGCAGTTAATCTGACATATTTCAC
ACCTGCGATATCACACGTGATGCTGGCGCCAACAACGATAGCAACCACGA
CAGCCTCGGCCACAATGGTCCAGATCCAGACGACAGCGGCGCCAAGTCAC
GACTTGGAGACGGGCGGCAACTCCACATCCAGCGACCCCGGCGAATTTGA
CAATTTAAATTCGTTCTACTTTTATGAGACCGAACAGTTTGCTGTGCTCT
GGATCCTGTTCACCGTCATCGTTCTGGGCAATTCAGCTGTTCTGTTCGTG
ATGTTCATCAACAAGAATCGCAAGTCGCGGATGAACTACTTCATTAAACA
GCTGGCATTGGCAGATCTGTGCGTGGGACTGCTCAACGTCCTCACCGACA
TCATATGGCGCATCACGATTTCGTGGCGGGCAGGCAACCTGGCCTGCAGG
CCATCCGCTTCTCGCAGGTCTGCGTCACATACTCGTCCACCTACGTGCTG
GTGGCCATGAGCATCGACAGATACGATGCCATCACACACCCCATGAACTT
CTTCAAAGTCGTGGAAAAGAGCCCGTCACCTGATGGCTGGCGCATGGCCT
CATCTCGGCGTTGTTTTCACTTCCCATCCTGGTTTTGTACGAGGAGAAGC
TCATCCAAAGACATCCGCTAATGCTGGATTGAGTTGGGTTC
FMO13944.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CCAP-R-RC | 2986 | CG33344-RC | 641..1471 | 9..841 | 4025 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25941257..25941626 | 378..9 | 1850 | 100 | Minus |
| 3R | 32079331 | 3R | 25925506..25925707 | 713..512 | 915 | 99 | Minus |
| 3R | 32079331 | 3R | 25925768..25925905 | 514..377 | 690 | 100 | Minus |
| 3R | 32079331 | 3R | 25925189..25925315 | 841..713 | 500 | 96.1 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:01:52 has no hits.
FMO13944.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:20:46 Download gff for
FMO13944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CcapR-RC | 641..1471 | 9..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:56:41 Download gff for
FMO13944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CCAP-R-RC | 641..1471 | 9..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:56:41 Download gff for
FMO13944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25925189..25925315 | 713..841 | 96 | <- | Minus |
| 3R | 25925507..25925704 | 515..712 | 98 | <- | Minus |
| 3R | 25925768..25925903 | 379..514 | 100 | <- | Minus |
| 3R | 25941257..25941626 | 9..378 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:20:46 Download gff for
FMO13944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21750911..21751037 | 713..841 | 96 | <- | Minus |
| arm_3R | 21751229..21751426 | 515..712 | 98 | <- | Minus |
| arm_3R | 21751490..21751625 | 379..514 | 100 | <- | Minus |
| arm_3R | 21766979..21767348 | 9..378 | 100 | | Minus |
