FMO13953.5prime Sequence
992 bp (951 high quality bases) assembled on 2014-01-10
> FMO13953.5prime
TCAGTCGACATGTCGCCAAACAACAGCGCGGAAAAGCCAGTCAATCCCAA
CGAGCACCTGCACATACCGAAGTGGATAAATGAGGAATACTTCCAGCCGA
TCATCGAGAAGGATGTGGAAAACTTTGACAAGATCATAAACCTTGTGCCC
ATTGCGGCCACTGCGCCCGGCGAGAACTACACATCCATTATGATCCGCGT
CATTGTGGATATACTGCTGAAGGATGGCAGCGAGCAGAGGGTATCGTACA
TTTTGAAGACAATGCTGGAGGCGGACAGTGGAGCGGATGTGATCGATGGC
ATGGGACTTTTTCCCAAGGAGCGAAAAATGTACGAGGTGCACATCCCGCA
GTTCGTAAAGCTTTACAAGGAGGCTGGCCTGGAAATCGAATTGGCGCCCA
AGTGCCTCCATGTCGACGCCACTGACGAATTGATTACCATGGTTTTCGAG
GATCTGAGCCGGCAGAATTTCAAGAACTTCGATCGGCTAAAAGGGTTCGA
TCTGCCGCACATGCGAGAAGTGCTCCGGAAACTGGCCGAACTGCATGCTG
CATCCGTGGTGGCCAAGGAAATAAATGGTCCCTACGATGCCATGTACAAC
ATGTCCATCTACAACGAGCAGAGTCGGGACCTCTTTGAGTCTCTGGGTAA
GCAGCGAGAGGAGCAATTCCTCAAGGCCATGCGCAACTGGGACCTCGAGA
ATGCCGAAAGCTACATCGCCCGGATGTGGGACCCCTTGGAGGTGTCGAGG
AAGCAGTGCAAGTCAATCAGGTGGACGAGGACGAGTTTCAATGTGCTGAA
CCACGGCGACTGTTGGTCCAACACATCATGTTCAACTACAAGGATAACGG
CGAGATCGATAAACCTAATTGGTGGACTTGCAGTTGGCCAGTGGGGCAGC
CCGGCTCAAGACCTTTGGGACCGGATCCAACTTCGGCTCGCTGGATATCA
GAATAAGGAATTCGATCCCTTTATTCGATCTACCCGGCGGTC
FMO13953.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10550-RD | 1460 | CG10550-RD | 85..1064 | 10..982 | 4515 | 98 | Plus |
| CG10550-RC | 1594 | CG10550-RC | 219..1198 | 10..982 | 4515 | 98 | Plus |
| CG10550-RB | 1464 | CG10550-RB | 89..1068 | 10..982 | 4515 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25306870..25307629 | 976..223 | 3240 | 97.5 | Minus |
| 3R | 32079331 | 3R | 25307689..25307902 | 223..10 | 1070 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:02:13 has no hits.
FMO13953.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:20:57 Download gff for
FMO13953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10550-RB | 81..1079 | 1..992 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:56:54 Download gff for
FMO13953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10550-RB | 81..1079 | 1..992 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:56:54 Download gff for
FMO13953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25306852..25307628 | 224..992 | 96 | <- | Minus |
| 3R | 25307689..25307909 | 1..223 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:20:57 Download gff for
FMO13953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21132574..21133350 | 224..992 | 96 | <- | Minus |
| arm_3R | 21133411..21133631 | 1..223 | 98 | | Minus |
