FMO13955.5prime Sequence
1063 bp (984 high quality bases) assembled on 2014-01-10
> FMO13955.5prime
TCAGTCGACATGTCGACAAACGAACCGAGCATTACTAACAAGTTGCGTTC
CCTCCTGCTAGATGACCAGGCGGCCAGGGATCGGCTGATGCTCAAGCCGG
CATTAGCCGTCTCCAAAGCGATCAGCCAGCACCGCTCCGAGTTCCACCAG
GACGAGAACGAGGCGGGAGCAGAAGGATCTGCAGCAAAACCAGATCCACC
CATCGGAGCAGCCACGCCAACCAGGCAGGAAGGACACTGGGCCCGACTGC
AGCAAGATCTCAACAGCCCCAACGCTGCACTCCGATTACGCGCCATTCGT
GCATTAAAAAGCCCCACCAAGTCGGCATACAATACCTTCGATGTGCCTTT
AGCCGAACAAAGCATCATCACGATGGAAGAACGCAATCCCCAGGAGCCGC
CCTCCCTCCCCGAGTTGCTCAAGGACATAGTCGTATATGTGGAGGTGCGA
ACTGGAAACGACAATCGCTCTGAGGGCGTAAAATCAATTATTGCCAAGAT
GGGAGCCCAGGTCAAAGATCGCCTAACGCGAACCACCACACACGTTGTCT
TCAAGGATGGCCTGCTCTCCACCTATAAAAAGGCCACCGAGTGGAATATA
CCAGTCGTTTCCATTCTGTGGATTGAAGCTTGCAAGGTGCAGCTGAAAAT
ATGCGATCCCAAGCAATTTCCAATCAGCAATATACGCATGTACGAGTATC
CCGAGCTCTTTGGCAAAATGCCGCGCGTTAAGTTCATGCAGCCGGACTCC
GAGTTGAATCAGCGACCCCGCAAACGCAAGGAAACACCCACATCCTCCAA
GGACAACGAGCCAGGATCGACTAACAAACGAGCCCAGACCGGAACTCCAA
CAACCACCACACCAAAGAAGAACATCAGCCGCTTTTTCAGAGCCATTACC
ACAATAGCCATCCGGATGATGAGGCAATAGAGTCGCCAGCCACCAACCTA
CTCACAGGAAAAGCAGTGATGCTACCCTCCTTTGCGCCCGGTGCCCTCCC
AGCTGATGGGAAACAATGGTAGTGGAAGATGCGGTAGCCGAAAGGTGCAG
CCCAAAAAGTTTG
FMO13955.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MCPH1-RC | 3149 | CG42572-RC | 75..1137 | 9..1063 | 4830 | 97.7 | Plus |
| MCPH1-RA | 2661 | CG42572-RA | 75..1137 | 9..1063 | 4830 | 97.7 | Plus |
| MCPH1-RD | 3360 | CG42572-RD | 337..1348 | 60..1063 | 4575 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11903165..11903464 | 308..9 | 1500 | 100 | Minus |
| 2R | 25286936 | 2R | 11902619..11902840 | 530..309 | 1110 | 100 | Minus |
| 2R | 25286936 | 2R | 11902358..11902551 | 723..530 | 970 | 100 | Minus |
| 2R | 25286936 | 2R | 11898919..11899063 | 867..723 | 680 | 97.9 | Minus |
| 2R | 25286936 | 2R | 11898551..11898634 | 954..872 | 280 | 91.7 | Minus |
Blast to na_te.dros performed on 2014-11-29 00:02:16 has no hits.
FMO13955.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:20:59 Download gff for
FMO13955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MCPH1-RA | 67..1137 | 2..1063 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:56:56 Download gff for
FMO13955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MCPH1-RA | 67..1137 | 2..1063 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:56:56 Download gff for
FMO13955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11902619..11902840 | 309..530 | 100 | <- | Minus |
| 2R | 11902358..11902550 | 531..723 | 100 | <- | Minus |
| 2R | 11898919..11899062 | 724..867 | 98 | <- | Minus |
| 2R | 11898547..11898638 | 868..957 | 92 | <- | Minus |
| 2R | 11903165..11903472 | 2..308 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:20:59 Download gff for
FMO13955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7786052..7786143 | 868..957 | 92 | <- | Minus |
| arm_2R | 7786424..7786567 | 724..867 | 98 | <- | Minus |
| arm_2R | 7789863..7790055 | 531..723 | 100 | <- | Minus |
| arm_2R | 7790124..7790345 | 309..530 | 100 | <- | Minus |
| arm_2R | 7790670..7790977 | 2..308 | 98 | | Minus |
