FMO13956.5prime Sequence
1031 bp (956 high quality bases) assembled on 2014-01-10
> FMO13956.5prime
TCAGTCGACATGTCTAAATACTTTTGTCACCGCCCAAATCGTTGTCTGTC
TAGCTTTCTTATCAGCAGAAGGAAAATTGAAAAGGTAAGCTCCGTTTTGC
TGTACGGAGTGCAGATTGTATCCCTGCACATTGAAGGTCAAGAGCGCCTT
TGCTTGGCGCAAATTTCAAATACATTACTAAAACAATTCAGTTACAACGA
GATACACAACAGGAGAGTTGCTCTTGGCATTACTTGTGTACAATGTACAC
CCGTGCAATTGGAAATATTGAGAAGAGCTGGCGCCATGCCAGTGAGTTCC
CGACGATGTGGCATGATTACCCGCAGGGAAGCGGAGCGTCTATGCAAAAG
TTTCTTGGGCGACAATACACCACCACGACTACCTGACGACTTTGCGTTTA
ACGTCCAGCACAAATGTGCTTGGGGCTGCCGCGGATCCTTTCTACCCTCG
CGTTACAACTCATCAAGGGCTAAGTGCATTAAGTGTTCATATTGCGGAAT
GTTTTTCTCGCCCAATAAATTTATTTTTCACTCACATCGCATAACAACTA
ATGACAGGTACGTTCAGCCTGATGCAGCGAACTTTAATTCCTGGCGTCGA
CACATGTCTCTGAGTGGAAATGATTACGATGAGAAAATAATTCATGCATG
GGAAGATGTCAAGGCCATGTTTAATGGCGGCACAAGAAAGCGGCTTGTTG
GCAGCAGCATTAACCCTCGAAGTCCTGGCTCACCAACACAATCCACTGCG
GTAAGTTCCGGAGTTGGCAGCAGTTCCTGTGGCTCCCCAACGAGTTTCGA
AAGAGATACCAATGAAGTCGACGGGAAATCGGGGTCCTCGCTCCCACACG
CTCGCAGATCGACAGCCAGTACAACTACGGAACAGTAGCTGAGCCGCTGC
TGTATTAGGAGTAACGGCGTACACTGCAACAGTCGGTGTTCCTTAACTTA
CATGCTCTACGGTCTTATCCCTTGCATCCCTCAGCAAGGAAGGGATCTTC
TCAATATGCCACATTCCGCAACTTTGTAGCG
FMO13956.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fuss-RC | 2597 | CG11093-RC | 269..1301 | 10..1029 | 4625 | 97.4 | Plus |
| fuss-RD | 3094 | CG11093-RD | 841..1798 | 85..1029 | 4250 | 97.2 | Plus |
| fuss-RB | 2638 | CG11093-RB | 385..1342 | 85..1029 | 4250 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 964803..965641 | 919..83 | 4065 | 99.5 | Minus |
| 4 | 1348131 | 4 | 968923..969001 | 88..10 | 395 | 100 | Minus |
| 4 | 1348131 | 4 | 803842..803920 | 88..10 | 380 | 98.7 | Minus |
| 2R | 25286936 | 2R | 12318048..12318126 | 88..10 | 365 | 97.5 | Minus |
| 4 | 1348131 | 4 | 221570..221648 | 88..10 | 350 | 96.2 | Minus |
| 4 | 1348131 | 4 | 347503..347581 | 10..88 | 350 | 96.2 | Plus |
| 2R | 25286936 | 2R | 2846106..2846184 | 10..88 | 350 | 96.2 | Plus |
| 2R | 25286936 | 2R | 3169496..3169574 | 10..88 | 350 | 96.2 | Plus |
| 3R | 32079331 | 3R | 4488075..4488151 | 88..12 | 325 | 94.8 | Minus |
| 2R | 25286936 | 2R | 1650835..1650905 | 88..18 | 295 | 94.4 | Minus |
| 2R | 25286936 | 2R | 1578493..1578571 | 88..10 | 290 | 91.1 | Minus |
| 2R | 25286936 | 2R | 4710022..4710100 | 88..10 | 245 | 87.3 | Minus |
Blast to na_te.dros performed 2014-11-29 00:02:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tc1-2 | 1644 | Tc1-2 TC1-2 1644bp | 144..224 | 90..10 | 378 | 96.3 | Minus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 1451..1483 | 843..875 | 111 | 81.8 | Plus |
FMO13956.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:21:01 Download gff for
FMO13956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fuss-RC | 266..1246 | 4..977 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:56:58 Download gff for
FMO13956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fuss-RC | 266..1246 | 4..977 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:56:58 Download gff for
FMO13956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 964737..965639 | 85..977 | 98 | <- | Minus |
| 4 | 968927..969004 | 4..84 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:21:01 Download gff for
FMO13956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 985363..986265 | 85..977 | 98 | <- | Minus |
| arm_4 | 989553..989630 | 4..84 | 96 | | Minus |
