FMO13957.5prime Sequence
974 bp (965 high quality bases) assembled on 2014-01-10
> FMO13957.5prime
TCAGTCGACATGGATACGACGCAAAGGAACCACCAAAATCTAGCCTTCGT
GGGCGACGACGGACGCAGTACGGCCAGCACAGTGGAGATTTCGACCAACA
GTCCAGCCCTGCGAGATAATTCCGATGACCAGGAGGCAGCCAAAGTGCCA
GAGGAGCGTGCCACCTGGGGCAAGGGCGTGGAGTTTCTGATGTCCTGCAT
CGCCATGTCCGTGGGTCTGGGAAACGTGTGGCGATTCCCCTTTACTGCCC
TCGATAATGGCGGTGGCGCCTTCCTCATACCATATCTCATTGTCCTGTTC
CTGATTGGCAAACCGATTTACTATCTGGAAATGGTAATTGGCCAGTTTTC
CAGTCGGGGCTCGGTTAAAGTGTTCGATTTGTGCCCGGCGATGAAAGGTG
TCGGAATCGGCCAGGTGATATCTATATCCATGGTGACCACCTACTATGTG
GCCATAATGGGCATAACCCTGCGCTATCTGTACGAATCGTTCCGGTCGCC
GTTGCCCTGGTCTGAGTGCCGACCGGAATGGGAATCCTTCTGCGTAGCGT
CCAGTCTGGGTAACACCTCCCAGTCCCTGGCCAGTCCCATGGACATGGAT
AGTTTGCCCCAGCGGCAGCCAGTGGCATCCGCGGAGTTGTATTTGCTTAA
GGAAGTGCTGCACGAGAAACCAAATATCGAGGAAGGAATCGGCCTACCAA
ACTGGGAGTTGGTCATTGGACTTTTTATCGCCTGGTCCTGTGTGTTTTTC
ATTATTCGTCGCGGAGTGAAGAGTTCGGGAAAGGCATCCTACTTCCTGGC
CCTTTTCCCGTACGTCATCATGGGTGTTCTTCTGGTGCGAGCTGTAACTC
TGCCGGGATCATAGACGGTATATACTACTTTATAAGCCGCTATGGGGAAG
ATTTTGGACCCGAAGGTTGGAACGCGCTGAAACTCATCGTTTCTACCTCC
TTGACCGTTCGTTCTGGCACAATA
FMO13957.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15279-RD | 2513 | CG15279-RD | 488..1445 | 10..963 | 4525 | 98.5 | Plus |
| CG15279-RA | 2110 | CG15279-RA | 67..472 | 10..415 | 1970 | 99 | Plus |
| CG15279-RB | 2531 | CG15279-RB | 488..893 | 10..415 | 1970 | 99 | Plus |
| CG15279-RA | 2110 | CG15279-RA | 722..1042 | 647..963 | 1355 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14848672..14848978 | 399..93 | 1535 | 100 | Minus |
| 2L | 23513712 | 2L | 14848008..14848256 | 644..396 | 1245 | 100 | Minus |
| 2L | 23513712 | 2L | 14846221..14846494 | 918..648 | 1205 | 98.5 | Minus |
| 2L | 23513712 | 2L | 14849039..14849122 | 93..10 | 420 | 100 | Minus |
| 2R | 25286936 | 2R | 12300722..12300885 | 329..166 | 325 | 79.9 | Minus |
| 3L | 28110227 | 3L | 9212982..9213163 | 179..360 | 310 | 78 | Plus |
| 2R | 25286936 | 2R | 9795678..9795857 | 181..360 | 240 | 75.6 | Plus |
Blast to na_te.dros performed on 2014-11-29 00:02:24 has no hits.
FMO13957.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2014-01-10 11:21:03 Download gff for
FMO13957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15279-RD | 488..1419 | 10..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:56:59 Download gff for
FMO13957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15279-RD | 488..1419 | 10..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:56:59 Download gff for
FMO13957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14846201..14846494 | 648..936 | 97 | <- | Minus |
| 2L | 14848005..14848254 | 398..647 | 99 | <- | Minus |
| 2L | 14848674..14848977 | 94..397 | 100 | <- | Minus |
| 2L | 14849039..14849122 | 10..93 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2014-01-10 11:21:03 Download gff for
FMO13957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14846201..14846494 | 648..936 | 97 | <- | Minus |
| arm_2L | 14848005..14848254 | 398..647 | 99 | <- | Minus |
| arm_2L | 14848674..14848977 | 94..397 | 100 | <- | Minus |
| arm_2L | 14849039..14849122 | 10..93 | 100 | | Minus |
